Consensus flow list

Changes

22
# Step Field From To Why
23,402 bootstrap_labels prefLabel [{"@value":"yttrium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Bootstrapped prefLabel from legacy name field
23,403 bootstrap_labels name yttrium Purged legacy name field to enforce prefLabel usage
23,404 bootstrap_labels synonyms ["(88y)yttrium","(91y)yttrium","(93y)yttrium","39Y","AC1L2N4X","KST-1A1353","KST-1A1418","KST-1A2117","Y1","YTTRIUM ION… [] Removed legacy synonyms field in favor of structured labels
109,536 default_context_mapping context {"dimension":"Resource","media":"Ground"} Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
109,537 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/reso-grou Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
220,670 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
226,320 normalize_name_case prefLabel [{"@value":"yttrium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Yttrium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
227,093 ec_cross_check ec_numbers [] ["231-174-8"] Resolved from EC-inventory: 231-174-8 from CAS 7440-65-5
247,905 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
247,906 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
247,907 enrich_references references [] [{"@id":"gmelin:16319","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['7440-65-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_33331']; candidate_pubchem_cids=[23993]; selected_pubchem_cids=[23993]; formula_similarity_expected=['Y']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
254,297 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… rdkit_pre_consensus from '[Y]'; added: monoisotopic_mass
257,319 chebi_altlabels altLabel [] [{"@value":"39Y","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
273,312 consensus_match altLabel [{"@value":"39Y","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… [{"@value":"39Y","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… group_key=yttrium||dimension=Resource > media=Ground; cas=7440-65-5; added Common Chemistry CAS names as altLabel: MeSH ID: D015019, Yttrium element, Yttrium-89; object_uuid=fo-0a6c3f7245bbdce4
273,313 consensus_match cas_match_labels {"7440-65-5":"exactMatch"} group_key=yttrium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-65-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-0a6c3f7245bbdce4: {'7440-65-5': 'exactMatch'}
279,551 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Yttrium'
286,434 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… rdkit_post_consensus from '[Y]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
335,787 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/64b1ce31-6556-… associations resolved on the elementary layer
393,950 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… typed the way the ontology types it
403,219 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalElement"] the substance's answer, copied onto its flow
403,220 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Y"],"attes… the substance's answer, copied onto its flow
403,862 flow_layers.pubchem_element_enrichment prefLabel [{"@value":"Yttrium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Yttrium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichm… element name from the flow object: Yttrium

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