Consensus flow list

Changes

29
# Step Field From To Why
16,355 bootstrap_labels prefLabel [{"@value":"Tin, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Bootstrapped prefLabel from legacy name field
16,356 bootstrap_labels name Tin, ion Purged legacy name field to enforce prefLabel usage
53,548 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
53,549 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
72,014 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
72,015 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
161,554 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
161,555 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
173,792 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
173,793 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
218,713 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,854 normalize_name_case prefLabel [{"@value":"Tin, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… [{"@value":"Tin, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
242,566 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
242,567 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
242,568 enrich_references references [] [{"@id":"gmelin:7616","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… Added references with provenance; cas_numbers=['22537-50-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30476']; candidate_pubchem_cids=[4077523]; selected_pubchem_cids=[4077523]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
256,549 chebi_altlabels altLabel [] [{"@value":"Sn(4+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
272,670 consensus_match altLabel [{"@value":"Sn(4+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… [{"@value":"Sn(4+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… group_key=tin,ion||dimension=Environmental > media=Water > water_body=Ocean; cas=22537-50-4; added Common Chemistry CAS names as altLabel: Sn<sup>4+</sup>, Stannic ion, Tin ion(4+), Tin(IV); object_uuid=fo-116b07baae50e6df
272,671 consensus_match cas_match_labels {"22537-50-4":"exactMatch"} group_key=tin,ion||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi']; cas_sources={'22537-50-4': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-116b07baae50e6df: {'22537-50-4': 'exactMatch'}
277,978 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'tin(4+)'
284,697 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… rdkit_post_consensus from '[Sn+4]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
292,904 dedupe_altlabels altLabel [{"@value":"Sn(4+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… [{"@value":"Sn(4+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensu… Deduplicated altLabel values and removed entries matching prefLabel
307,821 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/19b8353d-7796-… associations resolved on the elementary layer
317,044 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/34bfe278-8b2a-… associations resolved on the elementary layer
361,821 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/bc723659-833e-… associations resolved on the elementary layer
367,940 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/d13a1f0c-5201-… associations resolved on the elementary layer
392,330 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… typed the way the ontology types it
400,737 link_flows_to_their_substance types ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
400,738 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sn","Sn+4"… the substance's answer, copied onto its flow
403,952 substance_label_v1 prefLabel [{"@value":"Tin, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… [{"@value":"Tin, ion","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAttri… the substance's name: Tin, ion

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