Consensus flow list

Changes

22
# Step Field From To Why
15,341 bootstrap_labels prefLabel [{"@value":"rhenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Bootstrapped prefLabel from legacy name field
15,342 bootstrap_labels name rhenium Purged legacy name field to enforce prefLabel usage
15,343 bootstrap_labels synonyms ["(186re)rhenium","AC1L2N3S","Interferon: Recombinant Gamma (Genentech) (not the same as NSC 373360)","KST-1A2130","KST… [] Removed legacy synonyms field in favor of structured labels
50,988 default_context_mapping context {"dimension":"Resource","media":"Ground"} Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
50,989 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/reso-grou Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
218,393 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,630 normalize_name_case prefLabel [{"@value":"rhenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Rhenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
226,980 ec_cross_check ec_numbers [] ["231-124-5"] Resolved from EC-inventory: 231-124-5 from CAS 7440-15-5
241,662 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
241,663 enrich_references references [] [{"@id":"https://commonchemistry.cas.org/detail?cas_rn=7440-15-5","provenance":{"prov:wasGeneratedBy":"enrich_reference… Added references with provenance; cas_numbers=['7440-15-5']; matched_chebi_ids=[]; candidate_pubchem_cids=[23947]; selected_pubchem_cids=[]; formula_similarity_expected=['Re']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
256,423 chebi_altlabels altLabel [] [{"@value":"75Re","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
271,500 consensus_match altLabel [{"@value":"75Re","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"75Re","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… group_key=rhenium||dimension=Resource > media=Ground; cas=7440-15-5; added Common Chemistry CAS names as altLabel: MeSH ID: D012211, NSC 600662, Rhenium element; object_uuid=fo-28315132e1025d10
271,501 consensus_match cas_match_labels {"7440-15-5":"exactMatch"} group_key=rhenium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-15-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-28315132e1025d10: {'7440-15-5': 'exactMatch'}
277,708 opsin_iupac properties {} {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Rhenium'
279,779 rdkit_authoritative properties {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… rdkit_authoritative: set definitive structural data from unique InChI
284,406 rdkit_post_consensus properties {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… rdkit_post_consensus from '[Re]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
290,405 strip_catalogue_altlabels altLabel [{"@value":"75Re","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"75Re","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Removed 1 catalogue altLabel value(s): 'NSC 600662' (registry code)
306,541 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/1729c87c-6556-… associations resolved on the elementary layer
392,063 normalise_property_values properties {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… typed the way the ontology types it
400,355 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalElement"] the substance's answer, copied onto its flow
400,356 link_flows_to_their_substance properties {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… {"https://w3id.org/chemrof/IUPAC_name":{"@id":"https://w3id.org/chemrof/IUPAC_name","rdfs:label":"IUPAC name","@value":… the substance's answer, copied onto its flow
403,831 flow_layers.pubchem_element_enrichment prefLabel [{"@value":"Rhenium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Rhenium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichm… element name from the flow object: Rhenium

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