Consensus flow list

Changes

31
# Step Field From To Why
2,968 bootstrap_labels prefLabel [{"@value":"Potassium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… Bootstrapped prefLabel from legacy name field
2,969 bootstrap_labels name Potassium, ion Purged legacy name field to enforce prefLabel usage
28,042 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
28,043 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
30,204 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
30,205 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
52,390 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
52,391 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
199,346 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
199,347 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
214,335 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
221,774 normalize_name_case prefLabel [{"@value":"Potassium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… [{"@value":"Potassium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
230,038 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
230,039 enrich_references skos_definition [{"@value":"A monoatomic monocation obtained from potassium.","@language":"en","provenance":{"prov:wasGeneratedBy":"enr… Merged ChEBI/PubChem definitions into skos:definition
230,040 enrich_references references [] [{"@id":"gmelin:15203","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['24203-36-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29103']; candidate_pubchem_cids=[813, 44472433]; selected_pubchem_cids=[813]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,146 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… rdkit_pre_consensus from '[K+]'; added: monoisotopic_mass
254,721 chebi_altlabels altLabel [] [{"@value":"K(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
270,952 consensus_match prefLabel [{"@value":"Potassium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… [{"@value":"Potassium(1+)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"c… cas=24203-36-9; cc_chebi_agreed_name='Potassium(1+)'; object_uuid=fo-3415188c983fe425
270,953 consensus_match altLabel [{"@value":"K(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"K(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… cas=24203-36-9; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-3415188c983fe425
270,954 consensus_match altLabel [{"@value":"K(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"K(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… group_key=potassium,ion||dimension=Environmental > media=Water > water_body=Long-term; cas=24203-36-9; added Common Chemistry CAS names as altLabel: K<sup>1+</sup>, Potassium (K<sup>+</sup>), Potassium ion (K<sup>+</sup>), Potassium ion(1+), Potassium monocation, Potassium, ion (K<sup>1+</sup>); object_uuid=fo-3415188c983fe425
270,955 consensus_match cas_match_labels {"24203-36-9":"exactMatch"} group_key=potassium,ion||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi']; cas_sources={'24203-36-9': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-3415188c983fe425: {'24203-36-9': 'exactMatch'}
274,278 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Potassium(1+)'
280,703 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… rdkit_post_consensus from '[K+]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
292,164 dedupe_altlabels altLabel [{"@value":"K(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"K(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Deduplicated altLabel values and removed entries matching prefLabel
295,085 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/03ac80dc-56fa-… associations resolved on the elementary layer
296,161 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/05cb4f27-5c60-… associations resolved on the elementary layer
307,243 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/17f0762e-681b-… associations resolved on the elementary layer
380,727 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/f8ffda3a-7148-… associations resolved on the elementary layer
388,573 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… typed the way the ontology types it
395,356 link_flows_to_their_substance types ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
395,357 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["K","K+"],"… the substance's answer, copied onto its flow

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