Consensus flow list

Changes

59
# Step Field From To Why
21,538 bootstrap_labels prefLabel [{"@value":"tetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Bootstrapped prefLabel from legacy name field
21,539 bootstrap_labels name tetracycline Purged legacy name field to enforce prefLabel usage
21,540 bootstrap_labels synonyms ["tetracycline","tetracycline hydrochloride","(4s,4as,5as,6s,12ar)-4-(dimethylamino)-1,6,10,11,12a-pentahydroxy-6-methy… [] Removed legacy synonyms field in favor of structured labels
21,556 bootstrap_labels synonyms ["(-)-Tetrahcycline hydrochloride","(2E,6S,12aS)-2-[amino(hydroxy)methylidene]-4-(dimethylamino)-6,10,11,12a-tetrahydro… [] Removed legacy synonyms field in favor of structured labels
76,498 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
76,499 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
76,748 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
76,749 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
109,748 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
109,749 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
142,210 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
142,211 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
152,398 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
152,399 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
157,760 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Medium stack, <150 meters","population_density":"Rural (<1000 peop… Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks
157,761 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-mest15me-ru10pesq Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks
158,594 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
158,595 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-noag Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
164,818 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
164,819 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
170,332 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
170,333 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
189,486 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified
189,487 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified
193,154 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
193,155 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-aicrhe Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
199,216 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
199,217 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
201,088 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground
201,089 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground
220,243 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,960 normalize_name_case prefLabel [{"@value":"tetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… [{"@value":"Tetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
246,833 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
246,834 enrich_references skos_definition [{"@value":"A broad-spectrum polyketide antibiotic produced by the Streptomyces genus of actinobacteria.","@language":"… Merged ChEBI/PubChem definitions into skos:definition
246,835 enrich_references references [] [{"@id":"drugcentral:2611","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['60-54-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27902']; candidate_pubchem_cids=[11987855, 54675776, 54677640, 54679287, 54681983, 54685734, 54699147, 73169869]; selected_pubchem_cids=[54675776]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,990 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… rdkit_pre_consensus from 'CC1(C2CC3C(C(=O)C(=C(C3(C(=O)C2=C(C4=C1C=CC=C4O)O)O)O)C(=O)N)N(C)C)O'; added: inchi2d_string, monoisotopic_mass
257,092 chebi_altlabels altLabel [] [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
272,371 consensus_match altLabel [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… group_key=tetracycline||dimension=Environmental > media=Air > indoor=Unknown; cas=60-54-8; added Common Chemistry CAS names as altLabel: (-)-Tetracycline, (4<em>S</em>,4a<em>S</em>,5a<em>S</em>,6<em>S</em>,12a<em>S</em>)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-2-naphthacenecarboxamide, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-, (4<em>S</em>,4a<em>S</em>,5a<em>S</em>,6<em>S</em>,12a<em>S</em>)-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-, [4<em>S</em>-(4α,4aα,5aα,6β,12aα)]-, Achromycin (naphthacene derivative), Acromicina, Actisite, Agromicina, Akne-Pyodron, Akne-Pyodron Kur, Ambramicina, Ambramycin, Apo-Tetra, Arcanacycline, Bio-Tetra, Biocycline, Britaciclina, Calociclina, Ciclibion, Cyclomycin, Cytome, Dispatetrin, Economycin, Enterocycline, Florocycline, Gammatet, Ibicyn, Kinciclina, Latycin, Limecycline, MeSH ID: D013752, Medocycline, Mericycline, Micycline, NSC 108579, Neocycline, NorTet, Novo-Tetra, Nu-Tetra, Omegamycin, Orlycycline, Panmycin, Polycycline, Polycycline (antibiotic), Quimocyclin N, Quimpe Antibiotico, Resteclin, Retet, Robitet Robicaps, Roviciclina, Sagittacin N, Servitet, Spaciclina, Steclin V, Sumycin syrup, Tetra Hubber, Tetra-Co, Tetra-Proter, Tetrabioptal, Tetracap, Tetracitro S, Tetradecin, Tetrafil, Tetrafosammina, Tetralan, Tetralen, Tetramig, Tetramykoin, Tetraseptine, Triphacycline, Veracin, Vetacyclinum; object_uuid=fo-3f744e595d8908b4
272,372 consensus_match cas_match_labels {"60-54-8":"exactMatch"} group_key=tetracycline||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'60-54-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-3f744e595d8908b4: {'60-54-8': 'exactMatch'}
279,180 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(4S,4aS,5aS,6S,12aS)-4-(dimethylamino)-3,6,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide'
286,036 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… rdkit_post_consensus from 'CN(C)[C@@H]1C(O)=C(C(N)=O)C(=O)[C@@]2(O)C(O)=C3C(=O)c4c(O)cccc4[C@@](C)(O)[C@H]3C[C@@H]12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,208 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O8… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
291,475 strip_catalogue_altlabels altLabel [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… [{"@value":"(4S,4aS,5aS,12aS)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,6,10,12,12a-pentahydroxy-6-methyl-1,11… Removed 1 catalogue altLabel value(s): 'NSC 108579' (registry code)
319,262 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/3c756d03-4de0-… associations resolved on the elementary layer
319,387 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/3cdea544-56dc-… associations resolved on the elementary layer
335,871 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/64b20c87-83d0-… associations resolved on the elementary layer
352,105 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/9b58820d-d88f-… associations resolved on the elementary layer
357,220 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/ac673c67-e6c9-… associations resolved on the elementary layer
359,903 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/b5d1b356-54bd-… associations resolved on the elementary layer
360,319 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/b745b86f-7504-… associations resolved on the elementary layer

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