Consensus flow list

Changes

30
# Step Field From To Why
22,067 bootstrap_labels prefLabel [{"@value":"Lithium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Bootstrapped prefLabel from legacy name field
22,068 bootstrap_labels name Lithium, ion Purged legacy name field to enforce prefLabel usage
80,916 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
80,917 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
101,992 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
101,993 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
119,186 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
119,187 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
138,708 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
138,709 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
220,395 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
226,080 normalize_name_case prefLabel [{"@value":"Lithium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… [{"@value":"Lithium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
247,250 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
247,251 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
247,252 enrich_references references [] [{"@id":"gmelin:15205","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['17341-24-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49713']; candidate_pubchem_cids=[28486]; selected_pubchem_cids=[28486]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
254,113 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… rdkit_pre_consensus from '[Li+]'; added: monoisotopic_mass
257,179 chebi_altlabels altLabel [] [{"@value":"LITHIUM ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,437 consensus_match altLabel [{"@value":"LITHIUM ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… [{"@value":"LITHIUM ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… group_key=lithium,ion||dimension=Environmental > media=Water > water_body=Unknown; cas=17341-24-1; added Common Chemistry CAS names as altLabel: Li<sup>1+</sup>, Lithium ion(1+); object_uuid=fo-60578a290a1719d5
268,438 consensus_match cas_match_labels {"17341-24-1":"exactMatch"} group_key=lithium,ion||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'17341-24-1': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-60578a290a1719d5: {'17341-24-1': 'exactMatch'}
279,327 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'lithium(1+)'
286,199 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… rdkit_post_consensus from '[Li+]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
293,178 dedupe_altlabels altLabel [{"@value":"LITHIUM ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… [{"@value":"LITHIUM ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… Deduplicated altLabel values and removed entries matching prefLabel
321,491 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/426d0901-57e7-… associations resolved on the elementary layer
332,013 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/57d50fd6-4d20-… associations resolved on the elementary layer
340,611 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/748783d0-10bb-… associations resolved on the elementary layer
350,375 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/95a43437-4b54-… associations resolved on the elementary layer
393,722 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… typed the way the ontology types it
402,862 link_flows_to_their_substance types ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
402,863 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Li","Li+"]… the substance's answer, copied onto its flow
404,045 substance_label_v1 prefLabel [{"@value":"Lithium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… [{"@value":"Lithium, ion","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasA… the substance's name: Lithium, ion

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