Consensus flow list

Changes

30
# Step Field From To Why
20,455 bootstrap_labels prefLabel [{"@value":"Sodium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Bootstrapped prefLabel from legacy name field
20,456 bootstrap_labels name Sodium, ion Purged legacy name field to enforce prefLabel usage
67,796 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
67,797 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
106,430 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
106,431 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
113,046 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
113,047 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
141,150 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
141,151 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
219,967 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,735 normalize_name_case prefLabel [{"@value":"Sodium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… [{"@value":"Sodium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
246,081 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
246,082 enrich_references skos_definition [{"@value":"A monoatomic monocation obtained from sodium.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich… Merged ChEBI/PubChem definitions into skos:definition
246,083 enrich_references references [] [{"@id":"gmelin:15196","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['17341-25-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29101']; candidate_pubchem_cids=[923, 96816]; selected_pubchem_cids=[923]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,774 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… rdkit_pre_consensus from '[Na+]'; added: monoisotopic_mass
257,015 chebi_altlabels altLabel [] [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
272,067 consensus_match altLabel [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; cas=17341-25-2; added Common Chemistry CAS names as altLabel: Na<sup>1+</sup>, Sodium (Na<sup>1+</sup>), Sodium cation(1+), Sodium ion(1+), Sodium, ion (Na<sup>1+</sup>), Sodium-23(1+); object_uuid=fo-6e3a6a9b38748e32
272,068 consensus_match cas_match_labels {"17341-25-2":"exactMatch"} group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi']; cas_sources={'17341-25-2': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-6e3a6a9b38748e32: {'17341-25-2': 'exactMatch'}
278,992 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'sodium(1+)'
285,812 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… rdkit_post_consensus from '[Na+]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
293,107 dedupe_altlabels altLabel [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Deduplicated altLabel values and removed entries matching prefLabel
314,935 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/2ece367c-6949-… associations resolved on the elementary layer
334,233 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5f69e76c-1e5b-… associations resolved on the elementary layer
337,542 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/6a3f413e-8aab-… associations resolved on the elementary layer
351,596 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/99c541c4-8876-… associations resolved on the elementary layer
393,375 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… typed the way the ontology types it
402,294 link_flows_to_their_substance types ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
402,295 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… the substance's answer, copied onto its flow
404,002 substance_label_v1 prefLabel [{"@value":"Sodium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… [{"@value":"Sodium, ion","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAt… the substance's name: Sodium, ion

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