Consensus flow list

Changes

58
# Step Field From To Why
19,963 bootstrap_labels prefLabel [{"@value":"oxytetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Bootstrapped prefLabel from legacy name field
19,964 bootstrap_labels name oxytetracycline Purged legacy name field to enforce prefLabel usage
19,965 bootstrap_labels synonyms ["(2Z,4S,4aR,5S,5aR,6S,12aS)-2-[amino(hydroxy)methylidene]-4-(dimethylamino)-5,6,10,11,12a-pentahydroxy-6-methyl-4,4a,5… [] Removed legacy synonyms field in favor of structured labels
65,322 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
65,323 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
101,848 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
101,849 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
102,162 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
102,163 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-noag Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil
111,868 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
111,869 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
113,178 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Medium stack, <150 meters","population_density":"Rural (<1000 peop… Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks
113,179 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-mest15me-ru10pesq Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks
144,830 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground
144,831 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground
151,020 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
151,021 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term)
159,720 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
159,721 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
172,256 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
172,257 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
177,260 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
177,261 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
183,356 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
183,357 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
189,128 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified
189,129 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified
197,720 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
197,721 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-aicrhe Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
219,822 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,625 normalize_name_case prefLabel [{"@value":"oxytetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"Oxytetracycline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
227,047 ec_cross_check ec_numbers [] ["201-212-8"] Resolved from EC-inventory: 201-212-8 from CAS 79-57-2
245,686 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
245,687 enrich_references skos_definition [{"@value":"A tetracycline used for treatment of infections caused by a variety of Gram positive and Gram negative micr… Merged ChEBI/PubChem definitions into skos:definition
245,688 enrich_references references [] [{"@id":"beilstein:2686362","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['79-57-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_27701']; candidate_pubchem_cids=[54675779, 54682550, 54686003, 54692966, 54693027, 54705189, 54710064, 54710380, 54726496, 57004235, 92222310, 118984634, 129010396, 132452761, 134715710, 146156145]; selected_pubchem_cids=[54675779]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
253,651 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… rdkit_pre_consensus from 'CC1(C2C(C3C(C(=O)C(=C(C3(C(=O)C2=C(C4=C1C=CC=C4O)O)O)O)C(=O)N)N(C)C)O)O'; added: inchi2d_string
256,968 chebi_altlabels altLabel [] [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
270,272 consensus_match altLabel [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… group_key=oxytetracycline||dimension=Environmental > media=Water > water_body=Long-term; cas=79-57-2; added Common Chemistry CAS names as altLabel: (4<em>S</em>,4a<em>R</em>,5<em>S</em>,5a<em>R</em>,6<em>S</em>,12a<em>S</em>)-4-(Dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-2-naphthacenecarboxamide, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-, (4<em>S</em>,4a<em>R</em>,5<em>S</em>,5a<em>R</em>,6<em>S</em>,12a<em>S</em>)-, 2-Naphthacenecarboxamide, 4-(dimethylamino)-1,4,4a,5,5a,6,11,12a-octahydro-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-, [4<em>S</em>-(4α,4aα,5α,5aα,6β,12aα)]-, 4-Dimethylamino-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-4,4a,5,5a-tetrahydrotetracene-2-carboxamide, Abbocin, Adamycin, Antibiotic TM 25, Berkmycen, Biostat PA, Clinimycin, Dabicycline, Erfamycin, Fanterrin, Geomycin, Geomycin (Streptomyces vimosus), Geotilin, Imperacin, LA 200, Lenocycline, Liquamycin, Liquamycin LA 200, Macocyn, MeSH ID: D010118, Mycoshield TMQTHC 20, NSC 9169, OTC, OTC (antibiotic), OXTC, Oksisyklin, Oxatets, Oxiter 200, Oxitetracyclin, Oxy-Kesso-Tetra, Oxycline, Oxydon, Oxyject LA, Oxylim, Oxymed 50, Oxymycin, Oxymykoin, Oxypam, Oxysentin 100, Oxyterracyne, Oxytetral, Proteroxyna, Riomitsin, Ryomycin, Solkaciclina, Stecsolin, Stevacin, Stevasin, TM 50, Tarocyn, Tarosin, Teravit, Terrafungine, Terralon LA, Terramycin, Terramycin Q 50, Tetran, Tormicina, Unimycin, Ursocyclin, Ursocycline, Vendarcin; object_uuid=fo-c2f9ac26736e4e2e
270,273 consensus_match cas_match_labels {"79-57-2":"exactMatch"} group_key=oxytetracycline||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'79-57-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c2f9ac26736e4e2e: {'79-57-2': 'exactMatch'}
285,668 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… rdkit_post_consensus from 'CC1(C2C(C3C(C(=O)C(=C(C3(C(=O)C2=C(C4=C1C=CC=C4O)O)O)O)C(=O)N)N(C)C)O)O'; confirmed: smiles_string, inchi2d_string, molecular_formula, molecular_mass, monoisotopic_mass
287,165 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C22H24N2O9… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
291,242 strip_catalogue_altlabels altLabel [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… [{"@value":"(4S,4aR,5S,5aR,6S,12aS)-4-(dimethylamino)-3,5,6,10,12,12a-hexahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,… Removed 5 catalogue altLabel value(s): 'LA 200' (grade code), 'NSC 9169' (registry code), 'Oxiter 200' (trade name), 'Oxysentin 100' (trade name), 'TM 50' (grade code)
313,679 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/2a9af29c-d58b-… associations resolved on the elementary layer
331,921 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5792908f-b162-… associations resolved on the elementary layer
332,078 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/5828a819-b778-… associations resolved on the elementary layer
336,933 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/68325b84-a684-… associations resolved on the elementary layer
337,588 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/6a816e4c-b935-… associations resolved on the elementary layer
353,417 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/9fc77a30-a757-… associations resolved on the elementary layer
356,532 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/aa3338c3-cf24-… associations resolved on the elementary layer
360,884 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/b9309cb6-d73d-… associations resolved on the elementary layer

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