Consensus flow list

Changes

32
# Step Field From To Why
17,284 bootstrap_labels prefLabel [{"@value":"Vanadium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Bootstrapped prefLabel from legacy name field
17,285 bootstrap_labels name Vanadium, ion Purged legacy name field to enforce prefLabel usage
55,710 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
55,711 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
126,184 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
126,185 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
188,822 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
188,823 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
198,780 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
198,781 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
219,009 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
225,053 normalize_name_case prefLabel [{"@value":"Vanadium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"Vanadium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
243,396 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V"],"attes… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
243,397 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
243,398 enrich_references references [] [{"@id":"gmelin:16007","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['22541-77-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49948']; candidate_pubchem_cids=[23990]; selected_pubchem_cids=[23990]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,993 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V"],"attes… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… rdkit_pre_consensus from '[V+3]'; added: molecular_formula, monoisotopic_mass
256,661 chebi_altlabels altLabel [] [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
273,246 consensus_match prefLabel [{"@value":"Vanadium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"Vanadium(3+)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"co… cas=22541-77-1; cc_chebi_agreed_name='Vanadium(3+)'; object_uuid=fo-dbed6cc9cce7bb19
273,247 consensus_match altLabel [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… cas=22541-77-1; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-dbed6cc9cce7bb19
273,248 consensus_match altLabel [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… group_key=vanadium,ion||dimension=Environmental > media=Water > water_body=Long-term; cas=22541-77-1; added Common Chemistry CAS names as altLabel: V<sup>3+</sup>, Vanadium 3+ ion, Vanadium III, Vanadium ion(3+), Vanadium, ion (V<sup>3+</sup>); object_uuid=fo-dbed6cc9cce7bb19
273,249 consensus_match cas_match_labels {"22541-77-1":"exactMatch"} group_key=vanadium,ion||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['chebi']; cas_sources={'22541-77-1': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-dbed6cc9cce7bb19: {'22541-77-1': 'exactMatch'}
278,210 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Vanadium(3+)'
284,952 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… rdkit_post_consensus from '[V+3]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,128 withhold_ambiguous_mass properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it
292,950 dedupe_altlabels altLabel [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… [{"@value":"V(3+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… Deduplicated altLabel values and removed entries matching prefLabel
308,903 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/1d5fff11-1564-… associations resolved on the elementary layer
344,114 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/8094f72c-8118-… associations resolved on the elementary layer
375,459 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/e8409091-b011-… associations resolved on the elementary layer
380,444 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/f8152976-6dfb-… associations resolved on the elementary layer
392,565 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… typed the way the ontology types it
401,091 link_flows_to_their_substance types ["https://w3id.org/chemrof/AtomCation"] the substance's answer, copied onto its flow
401,092 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["V","V+3"],… the substance's answer, copied onto its flow

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