Consensus flow list

Changes

22
# Step Field From To Why
25,057 bootstrap_labels prefLabel [{"@value":"lake water","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Bootstrapped prefLabel from legacy name field
25,058 bootstrap_labels name lake water Purged legacy name field to enforce prefLabel usage
166,480 default_context_mapping context {"dimension":"Resource","media":"Water","water_body":"Lake"} Mapped from context mapping for source=EF 3.1, source context Resources > Resources from water > Renewable material resources from water
166,481 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/reso-wate-lake Mapped from context mapping for source=EF 3.1, source context Resources > Resources from water > Renewable material resources from water
220,934 unit_normalization unit_iri https://vocab.brightway.one/units/unit/M3 Unit IRI set from normalization of 'm3'
226,534 normalize_name_case prefLabel [{"@value":"lake water","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Lake Water","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
227,123 ec_cross_check ec_numbers [] ["231-791-2"] Resolved from EC-inventory: 231-791-2 from CAS 7732-18-5
248,142 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1, commonchemistry_cas=['7732-18-5'])
248,143 enrich_references skos_definition [{"@value":"An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms","@language"… Merged ChEBI/PubChem definitions into skos:definition
248,144 enrich_references references [] [{"@id":"gmelin:117","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consen… Added references with provenance; cas_numbers=['7732-18-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_15377']; candidate_pubchem_cids=[962, 14798, 5460604, 10214376, 22247451]; selected_pubchem_cids=[962]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
254,348 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… rdkit_pre_consensus from 'O'; added: monoisotopic_mass
257,372 chebi_altlabels altLabel [] [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… Added 19 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s)
257,511 strip_cross_object_altlabels altLabel [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'WATER'
268,330 consensus_match altLabel [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… group_key=lakewater||dimension=Resource > media=Water > water_body=Lake; cas=7732-18-5; added Common Chemistry CAS names as altLabel: Aquafina, Distilled water, Hydrogen oxide (H<sub>2</sub>O), MeSH ID: D014867, Milli-Q water, NSC 147337, R 718, Ultrex II Ultrapure, Water; object_uuid=fo-e1e088d5abea4263
268,331 consensus_match cas_match_labels {"7732-18-5":"exactMatch"} group_key=lakewater||dimension=Resource > media=Water > water_body=Lake; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7732-18-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e1e088d5abea4263: {'7732-18-5': 'exactMatch'}
279,706 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'dihydridooxygen'
286,598 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… rdkit_post_consensus from 'O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
291,836 strip_catalogue_altlabels altLabel [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… [{"@value":"((1)H2)water","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… Removed 2 catalogue altLabel value(s): 'NSC 147337' (registry code), 'R 718' (grade code)
364,286 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/c506b970-7b92-… associations resolved on the elementary layer
394,113 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O"],"att… typed the way the ontology types it
403,569 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule","http://purl.obolibrary.org/obo/ENVO_04000007"] the substance's answer, copied onto its flow
404,332 substance_label_v1 prefLabel [{"@value":"Lake Water","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Lake water","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAtt… the substance's name: Lake water

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