Consensus flow list

Changes

22
# Step Field From To Why
22,121 bootstrap_labels prefLabel [{"@value":"Hydrogen carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… Bootstrapped prefLabel from legacy name field
22,122 bootstrap_labels name Hydrogen carbonate Purged legacy name field to enforce prefLabel usage
22,123 bootstrap_labels synonyms ["hydrogen carbonate","bicarbonate ion"] [] Removed legacy synonyms field in favor of structured labels
81,632 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
81,633 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
220,399 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
226,084 normalize_name_case prefLabel [{"@value":"Hydrogen carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… [{"@value":"Hydrogen Carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
247,269 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
247,270 enrich_references skos_definition [{"@value":"The carbon oxoanion resulting from the removal of a proton from carbonic acid.","@language":"en","provenanc… Merged ChEBI/PubChem definitions into skos:definition
247,271 enrich_references references [] [{"@id":"beilstein:3903504","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['71-52-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17544']; candidate_pubchem_cids=[767, 769]; selected_pubchem_cids=[769]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
254,112 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… rdkit_pre_consensus from 'C(=O)(O)[O-]'; added: monoisotopic_mass
257,171 chebi_altlabels altLabel [] [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
267,865 consensus_match prefLabel [{"@value":"Hydrogen Carbonate","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributed… [{"@value":"hydrogencarbonate","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo… group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; relationship_class=exact_match; candidate_name=hydrogencarbonate; cas=71-52-3; sources=['chebi', 'common_chemistry', 'pubchem']; reason=normalized names match; object_uuid=fo-f00dec7f76499f7b
267,866 consensus_match altLabel [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; cas=71-52-3; added current EF name as altLabel when prefLabel differs; object_uuid=fo-f00dec7f76499f7b
267,867 consensus_match altLabel [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; cas=71-52-3; added Common Chemistry CAS names as altLabel: Bicarbonate (HCO<sub>3</sub><sup>-</sup>), Bicarbonate anion, Bicarbonate ion (HCO<sub>3</sub><sup>1-</sup>), Carbonate (HCO<sub>3</sub><sup>1-</sup>), Carbonate ion (HCO<sub>3</sub><sup>1-</sup>), Carbonate, hydrogen, Carbonic acid, ion(1-), Hydrocarbonate(1-), Hydrogen carbonate (HCO<sub>3</sub><sup>-</sup>), Hydrogen carbonate anion, Hydrogen carbonate ion, Hydrogen carbonate ion (HCO<sub>3</sub><sup>-</sup>), Monohydrogen carbonate; object_uuid=fo-f00dec7f76499f7b
267,868 consensus_match cas_match_labels {"71-52-3":"exactMatch"} group_key=hydrogencarbonate||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'pubchem']; cas_sources={'71-52-3': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f00dec7f76499f7b: {'71-52-3': 'exactMatch'}
279,314 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'hydrogencarbonate'
286,185 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… rdkit_post_consensus from 'O=C([O-])O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
293,159 dedupe_altlabels altLabel [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… [{"@value":"Acid carbonate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… Deduplicated altLabel values and removed entries matching prefLabel
321,830 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/43c04b88-e980-… associations resolved on the elementary layer
393,705 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CHO3","CHO… typed the way the ontology types it
402,850 link_flows_to_their_substance types ["https://w3id.org/chemrof/MolecularAnion"] the substance's answer, copied onto its flow

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