Thiophene
Everything that changed this flow. Back to the flow
013f3991-0846-4c8c-ba5a-c388769ca859
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'CP 34' (grade code), 'NSC 405073' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=thiophene||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'110-02-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-b1b2f3e03f44a52a: {'110-02-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['110-02-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30856']; candidate_pubchem_cids=[1127, 8030, 12008815, 53429645]; selected_pubchem_cids=[8030]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 1,117 | bootstrap_labels | prefLabel | — | [{"@value":"thiophene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 1,118 | bootstrap_labels | name | thiophene | — | Purged legacy name field to enforce prefLabel usage |
| 1,119 | bootstrap_labels | synonyms | ["AC1L1Q3R","AKOS000120157","CP 34","Divinylene sulfide","Furan, thio-","Huile H50","Huile HSO","LTBB001350","Polythiop… | [] | Removed legacy synonyms field in favor of structured labels |
| 26,662 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 26,663 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 213,707 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,352 | normalize_name_case | prefLabel | [{"@value":"thiophene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Thiophene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 228,244 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 228,245 | enrich_references | skos_definition | — | [{"@value":"A monocyclic heteroarene that is furan in which the oxygen atom is replaced by a sulfur.","@language":"en",… | Merged ChEBI/PubChem definitions into skos:definition |
| 228,246 | enrich_references | references | [] | [{"@id":"gmelin:26113","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['110-02-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30856']; candidate_pubchem_cids=[1127, 8030, 12008815, 53429645]; selected_pubchem_cids=[8030]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,620 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | rdkit_pre_consensus from 'C1=CSC=C1'; added: monoisotopic_mass |
| 254,514 | chebi_altlabels | altLabel | [] | [{"@value":"Thiophen","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | Added 2 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,596 | consensus_match | altLabel | [{"@value":"Thiophen","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | [{"@value":"Thiophen","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | group_key=thiophene||dimension=Environmental > media=Air > strata=Long-term; cas=110-02-1; added Common Chemistry CAS names as altLabel: CP 34, Divinylene sulfide, Furan, thio-, Huile H50, Huile HSO, NSC 405073, Thiacyclopentadiene, Thiaphene, Thiofurfuran, Thiole, Thiotetrole; object_uuid=fo-b1b2f3e03f44a52a |
| 272,597 | consensus_match | cas_match_labels | — | {"110-02-1":"exactMatch"} | group_key=thiophene||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'110-02-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-b1b2f3e03f44a52a: {'110-02-1': 'exactMatch'} |
| 273,745 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Thiophene' |
| 280,124 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | rdkit_post_consensus from 'c1ccsc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,481 | strip_catalogue_altlabels | altLabel | [{"@value":"Thiophen","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | [{"@value":"Thiophen","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | Removed 2 catalogue altLabel value(s): 'CP 34' (grade code), 'NSC 405073' (registry code) |
| 294,375 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/013f3991-0846-… | associations resolved on the elementary layer |
| 388,023 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C4H4S"],"a… | typed the way the ontology types it |
| 394,608 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/1117 | prefLabel | ef:agent/bootstrap_labels | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v0 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v1 |
| ef:activity/change/20260821T1554374006150000/1118 | name | ef:agent/bootstrap_labels | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v1 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v2 |
| ef:activity/change/20260821T1554374006150000/1119 | synonyms | ef:agent/bootstrap_labels | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v2 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v3 |
| ef:activity/change/20260821T1554374006150000/26662 | context | ef:agent/default_context_mapping | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v3 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v4 |
| ef:activity/change/20260821T1554374006150000/26663 | context_iri | ef:agent/default_context_mapping | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v4 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v5 |
| ef:activity/change/20260821T1554374006150000/213707 | unit_iri | ef:agent/unit_normalization | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v5 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v6 |
| ef:activity/change/20260821T1554374006150000/221352 | prefLabel | ef:agent/normalize_name_case | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v6 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v7 |
| ef:activity/change/20260821T1554374006150000/228244 | properties | ef:agent/enrich_references | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v7 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v8 |
| ef:activity/change/20260821T1554374006150000/228245 | skos_definition | ef:agent/enrich_references | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v8 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v9 |
| ef:activity/change/20260821T1554374006150000/228246 | references | ef:agent/enrich_references | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v9 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v10 |
| ef:activity/change/20260821T1554374006150000/248620 | properties | ef:agent/rdkit_pre_consensus | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v10 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v11 |
| ef:activity/change/20260821T1554374006150000/254514 | altLabel | ef:agent/chebi_altlabels | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v11 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v12 |
| ef:activity/change/20260821T1554374006150000/272596 | altLabel | ef:agent/consensus_match | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v12 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v13 |
| ef:activity/change/20260821T1554374006150000/272597 | cas_match_labels | ef:agent/consensus_match | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v13 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v14 |
| ef:activity/change/20260821T1554374006150000/273745 | properties | ef:agent/opsin_iupac | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v14 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v15 |
| ef:activity/change/20260821T1554374006150000/280124 | properties | ef:agent/rdkit_post_consensus | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v15 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v16 |
| ef:activity/change/20260821T1554374006150000/287481 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v16 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v17 |
| ef:activity/change/20260821T1554374006150000/294375 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v17 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v18 |
| ef:activity/change/20260821T1554374006150000/388023 | properties | ef:agent/normalise_property_values | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v18 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v19 |
| ef:activity/change/20260821T1554374006150000/394608 | types | ef:agent/link_flows_to_their_substance | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v19 | ef:flow/013f3991-0846-4c8c-ba5a-c388769ca859/v20 |