Vamidothion
Everything that changed this flow. Back to the flow
0163065d-54d0-424b-ba31-3e9324bab1cf
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'RP 9895' (grade code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=vamidothion||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'2275-23-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-bacd50d76b9df20d: {'2275-23-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['2275-23-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38990']; candidate_pubchem_cids=[16775, 240552, 560193, 20056908]; selected_pubchem_cids=[560193]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 1,212 | bootstrap_labels | prefLabel | — | [{"@value":"vamidothion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 1,213 | bootstrap_labels | name | vamidothion | — | Purged legacy name field to enforce prefLabel usage |
| 1,214 | bootstrap_labels | synonyms | ["10465 rp","2-(2-Dimethoxyphosphinoylthioethylthio)-N-methylpropionamide","2-(2-dimethoxyphosphorylsulfanylethylsulfan… | [] | Removed legacy synonyms field in favor of structured labels |
| 26,736 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 26,737 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified |
| 213,745 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,376 | normalize_name_case | prefLabel | [{"@value":"vamidothion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Vamidothion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 228,346 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 228,347 | enrich_references | skos_definition | — | [{"@value":"An organic thiophosphate that is N-methyl-2-[(2-sulfanylethyl)sulfanyl]propanamide in which the thiol group… | Merged ChEBI/PubChem definitions into skos:definition |
| 228,348 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J3.703F","provenance":{"prov:wasGeneratedBy":"enrich_reference… | Added references with provenance; cas_numbers=['2275-23-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38990']; candidate_pubchem_cids=[16775, 240552, 560193, 20056908]; selected_pubchem_cids=[560193]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,657 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | rdkit_pre_consensus from 'CC(C(=O)NC)SCCSP(=O)(OC)OC'; added: monoisotopic_mass |
| 254,532 | chebi_altlabels | altLabel | [] | [{"@value":"Dimethyl S-(2-(1-methylcarbamoylethylthio)ethyl) phosphorothiolate","@language":"en","source":{"prov:wasGen… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 273,235 | consensus_match | altLabel | [{"@value":"Dimethyl S-(2-(1-methylcarbamoylethylthio)ethyl) phosphorothiolate","@language":"en","source":{"prov:wasGen… | [{"@value":"Dimethyl S-(2-(1-methylcarbamoylethylthio)ethyl) phosphorothiolate","@language":"en","source":{"prov:wasGen… | group_key=vamidothion||dimension=Environmental > media=Ground > geography=Unknown; cas=2275-23-2; added Common Chemistry CAS names as altLabel: <em>O</em>,<em>O</em>-Dimethyl <em>S</em>-[2-(1-methylcarbamoylethylthio)ethyl] phosphorothioate, Bamidothion, Dimethyl <em>S</em>-[2-(1-methylcarbamoylethylthio)ethyl] phosphorothiolate, Kilval, Phosphorothioic acid, <em>O</em>,<em>O</em>-dimethyl <em>S</em>-[2-[[1-methyl-2-(methylamino)-2-oxoethyl]thio]ethyl] ester, Phosphorothioic acid, <em>O</em>,<em>O</em>-dimethyl ester, <em>S</em>-ester with 2-[(2-mercaptoethyl)thio]-<em>N</em>-methylpropionamide, RP 9895; object_uuid=fo-bacd50d76b9df20d |
| 273,236 | consensus_match | cas_match_labels | — | {"2275-23-2":"exactMatch"} | group_key=vamidothion||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'2275-23-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-bacd50d76b9df20d: {'2275-23-2': 'exactMatch'} |
| 273,794 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'O,O-Dimethyl S-(2-(1-methylcarbamoylethylthio)ethyl) phosphorothioate' |
| 280,174 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | rdkit_post_consensus from 'CNC(=O)C(C)SCCSP(=O)(OC)OC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,520 | strip_catalogue_altlabels | altLabel | [{"@value":"Dimethyl S-(2-(1-methylcarbamoylethylthio)ethyl) phosphorothiolate","@language":"en","source":{"prov:wasGen… | [{"@value":"Dimethyl S-(2-(1-methylcarbamoylethylthio)ethyl) phosphorothiolate","@language":"en","source":{"prov:wasGen… | Removed 1 catalogue altLabel value(s): 'RP 9895' (grade code) |
| 294,432 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/0163065d-54d0-… | associations resolved on the elementary layer |
| 388,076 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C8H18NO4PS… | typed the way the ontology types it |
| 394,668 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 394,669 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_22153","rdfs:label":"acaricide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/1212 | prefLabel | ef:agent/bootstrap_labels | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v0 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v1 |
| ef:activity/change/20260820T0738569779880000/1213 | name | ef:agent/bootstrap_labels | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v1 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v2 |
| ef:activity/change/20260820T0738569779880000/1214 | synonyms | ef:agent/bootstrap_labels | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v2 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v3 |
| ef:activity/change/20260820T0738569779880000/26736 | context | ef:agent/default_context_mapping | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v3 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v4 |
| ef:activity/change/20260820T0738569779880000/26737 | context_iri | ef:agent/default_context_mapping | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v4 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v5 |
| ef:activity/change/20260820T0738569779880000/213745 | unit_iri | ef:agent/unit_normalization | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v5 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v6 |
| ef:activity/change/20260820T0738569779880000/221376 | prefLabel | ef:agent/normalize_name_case | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v6 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v7 |
| ef:activity/change/20260820T0738569779880000/228346 | properties | ef:agent/enrich_references | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v7 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v8 |
| ef:activity/change/20260820T0738569779880000/228347 | skos_definition | ef:agent/enrich_references | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v8 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v9 |
| ef:activity/change/20260820T0738569779880000/228348 | references | ef:agent/enrich_references | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v9 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v10 |
| ef:activity/change/20260820T0738569779880000/248657 | properties | ef:agent/rdkit_pre_consensus | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v10 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v11 |
| ef:activity/change/20260820T0738569779880000/254532 | altLabel | ef:agent/chebi_altlabels | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v11 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v12 |
| ef:activity/change/20260820T0738569779880000/273235 | altLabel | ef:agent/consensus_match | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v12 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v13 |
| ef:activity/change/20260820T0738569779880000/273236 | cas_match_labels | ef:agent/consensus_match | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v13 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v14 |
| ef:activity/change/20260820T0738569779880000/273794 | properties | ef:agent/opsin_iupac | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v14 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v15 |
| ef:activity/change/20260820T0738569779880000/280174 | properties | ef:agent/rdkit_post_consensus | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v15 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v16 |
| ef:activity/change/20260820T0738569779880000/287520 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v16 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v17 |
| ef:activity/change/20260820T0738569779880000/294432 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v17 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v18 |
| ef:activity/change/20260820T0738569779880000/388076 | properties | ef:agent/normalise_property_values | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v18 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v19 |
| ef:activity/change/20260820T0738569779880000/394668 | types | ef:agent/link_flows_to_their_substance | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v19 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v20 |
| ef:activity/change/20260820T0738569779880000/394669 | roles | ef:agent/link_flows_to_their_substance | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v20 | ef:flow/0163065d-54d0-424b-ba31-3e9324bab1cf/v21 |