Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 2 catalogue altLabel value(s): 'NSC 5779' (registry code), 'U 6324' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=phenyl-2-thiourea||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'103-85-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9e76b685b6bf480a: {'103-85-5': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['103-85-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_46261']; candidate_pubchem_cids=[67582, 676454, 88838885]; selected_pubchem_cids=[676454]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
218 bootstrap_labels prefLabel [{"@value":"phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… Bootstrapped prefLabel from legacy name field
219 bootstrap_labels name phenyl-2-thiourea Purged legacy name field to enforce prefLabel usage
1,762 bootstrap_labels synonyms [".alpha.-Phenylthiourea","1-PHENYL-2-THIOUREA","1-Phenylthiourea","1bug","2-thiourea, 1-phenyl-","AC-13462","AC1LDWMZ"… [] Removed legacy synonyms field in favor of structured labels
27,130 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
27,131 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
213,411 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
221,143 normalize_name_case prefLabel [{"@value":"phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… [{"@value":"Phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedT… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
227,376 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
227,377 enrich_references skos_definition [{"@value":"A member of the class of thioureas that is thiourea in which one of the hydrogens is replaced by a phenyl g… Merged ChEBI/PubChem definitions into skos:definition
227,378 enrich_references references [] [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J5.517D","provenance":{"prov:wasGeneratedBy":"enrich_reference… Added references with provenance; cas_numbers=['103-85-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_46261']; candidate_pubchem_cids=[67582, 676454, 88838885]; selected_pubchem_cids=[676454]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
248,371 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… rdkit_pre_consensus from 'C1=CC=C(C=C1)NC(=S)N'; added: monoisotopic_mass
254,413 chebi_altlabels altLabel [] [{"@value":"1-phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
270,653 consensus_match altLabel [{"@value":"1-phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… [{"@value":"1-phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… group_key=phenyl-2-thiourea||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=103-85-5; added Common Chemistry CAS names as altLabel: <em>N</em>-Phenylthiocarbamide, <em>N</em>-Phenylthiourea, MeSH ID: D010670, NSC 5779, Thiourea, <em>N</em>-phenyl-, Thiourea, phenyl-, U 6324, Urea, 1-phenyl-2-thio-, α-Phenylthiourea; object_uuid=fo-9e76b685b6bf480a
270,654 consensus_match cas_match_labels {"103-85-5":"exactMatch"} group_key=phenyl-2-thiourea||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'103-85-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9e76b685b6bf480a: {'103-85-5': 'exactMatch'}
273,514 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Phenyl-2-thiourea'
279,867 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… rdkit_post_consensus from 'NC(=S)Nc1ccccc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
287,311 strip_catalogue_altlabels altLabel [{"@value":"1-phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… [{"@value":"1-phenyl-2-thiourea","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… Removed 2 catalogue altLabel value(s): 'NSC 5779' (registry code), 'U 6324' (grade code)
294,629 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/021f7a54-1d28-… associations resolved on the elementary layer
387,793 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C7H8N2S"],… typed the way the ontology types it
394,270 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/218 prefLabel ef:agent/bootstrap_labels ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v0 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v1
ef:activity/change/20260820T0738569779880000/219 name ef:agent/bootstrap_labels ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v1 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v2
ef:activity/change/20260820T0738569779880000/1762 synonyms ef:agent/bootstrap_labels ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v2 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v3
ef:activity/change/20260820T0738569779880000/27130 context ef:agent/default_context_mapping ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v3 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v4
ef:activity/change/20260820T0738569779880000/27131 context_iri ef:agent/default_context_mapping ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v4 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v5
ef:activity/change/20260820T0738569779880000/213411 unit_iri ef:agent/unit_normalization ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v5 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v6
ef:activity/change/20260820T0738569779880000/221143 prefLabel ef:agent/normalize_name_case ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v6 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v7
ef:activity/change/20260820T0738569779880000/227376 properties ef:agent/enrich_references ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v7 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v8
ef:activity/change/20260820T0738569779880000/227377 skos_definition ef:agent/enrich_references ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v8 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v9
ef:activity/change/20260820T0738569779880000/227378 references ef:agent/enrich_references ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v9 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v10
ef:activity/change/20260820T0738569779880000/248371 properties ef:agent/rdkit_pre_consensus ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v10 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v11
ef:activity/change/20260820T0738569779880000/254413 altLabel ef:agent/chebi_altlabels ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v11 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v12
ef:activity/change/20260820T0738569779880000/270653 altLabel ef:agent/consensus_match ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v12 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v13
ef:activity/change/20260820T0738569779880000/270654 cas_match_labels ef:agent/consensus_match ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v13 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v14
ef:activity/change/20260820T0738569779880000/273514 properties ef:agent/opsin_iupac ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v14 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v15
ef:activity/change/20260820T0738569779880000/279867 properties ef:agent/rdkit_post_consensus ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v15 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v16
ef:activity/change/20260820T0738569779880000/287311 altLabel ef:agent/strip_catalogue_altlabels ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v16 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v17
ef:activity/change/20260820T0738569779880000/294629 concept_associations ef:agent/carry_associations_onto_flows ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v17 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v18
ef:activity/change/20260820T0738569779880000/387793 properties ef:agent/normalise_property_values ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v18 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v19
ef:activity/change/20260820T0738569779880000/394270 types ef:agent/link_flows_to_their_substance ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v19 ef:flow/021f7a54-1d28-479f-90ac-ec2807b502f9/v20

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