3-oxopentanedioic Acid
Everything that changed this flow. Back to the flow
0342fe3d-26f4-47c7-860a-5937fac6621a
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=3-oxopentanedioicacid||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'542-05-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e1a1e0c45f4c1c1b: {'542-05-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['542-05-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_88950']; candidate_pubchem_cids=[68328, 6950210]; selected_pubchem_cids=[68328]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 2,638 | bootstrap_labels | prefLabel | — | [{"@value":"3-oxopentanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttrib… | Bootstrapped prefLabel from legacy name field |
| 2,639 | bootstrap_labels | name | 3-oxopentanedioic acid | — | Purged legacy name field to enforce prefLabel usage |
| 2,640 | bootstrap_labels | synonyms | ["organic","3-oxoglutaricacid"] | [] | Removed legacy synonyms field in favor of structured labels |
| 27,776 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 27,777 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 214,219 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,696 | normalize_name_case | prefLabel | [{"@value":"3-oxopentanedioic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttrib… | [{"@value":"3-oxopentanedioic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttrib… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 229,717 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 229,718 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 229,719 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J15.072J","provenance":{"prov:wasGeneratedBy":"enrich_referenc… | Added references with provenance; cas_numbers=['542-05-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_88950']; candidate_pubchem_cids=[68328, 6950210]; selected_pubchem_cids=[68328]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,050 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | rdkit_pre_consensus from 'C(C(=O)CC(=O)O)C(=O)O'; added: monoisotopic_mass |
| 254,678 | chebi_altlabels | altLabel | [] | [{"@value":"b-Ketoglutaric Acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… | Added 1 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 262,178 | consensus_match | altLabel | [{"@value":"b-Ketoglutaric Acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… | [{"@value":"b-Ketoglutaric Acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… | group_key=3-oxopentanedioicacid||dimension=Environmental > media=Water > water_body=Ocean; cas=542-05-2; added Common Chemistry CAS names as altLabel: 1,3-Dicarboxyacetone, 3-Ketoglutaric acid, 3-Oxoglutaric acid, <em>s</em>-Acetonedicarboxylic acid, Acetone-1,3-dicarboxylic acid, Glutaric acid, 3-oxo-, Glutaric acid, β-oxo-, Pentanedioic acid, 3-oxo-, β-Ketoglutaric acid, β-Oxoglutaric acid; object_uuid=fo-e1a1e0c45f4c1c1b |
| 262,179 | consensus_match | cas_match_labels | — | {"542-05-2":"exactMatch"} | group_key=3-oxopentanedioicacid||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'542-05-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e1a1e0c45f4c1c1b: {'542-05-2': 'exactMatch'} |
| 274,169 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '3-oxopentanedioic Acid' |
| 280,589 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | rdkit_post_consensus from 'O=C(O)CC(=O)CC(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,117 | dedupe_altlabels | altLabel | [{"@value":"b-Ketoglutaric Acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… | [{"@value":"b-Ketoglutaric Acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributed… | Deduplicated altLabel values and removed entries matching prefLabel |
| 294,932 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/0342fe3d-26f4-… | associations resolved on the elementary layer |
| 388,461 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H6O5"],"… | typed the way the ontology types it |
| 395,206 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/2638 | prefLabel | ef:agent/bootstrap_labels | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v0 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v1 |
| ef:activity/change/20260821T1554374006150000/2639 | name | ef:agent/bootstrap_labels | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v1 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v2 |
| ef:activity/change/20260821T1554374006150000/2640 | synonyms | ef:agent/bootstrap_labels | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v2 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v3 |
| ef:activity/change/20260821T1554374006150000/27776 | context | ef:agent/default_context_mapping | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v3 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v4 |
| ef:activity/change/20260821T1554374006150000/27777 | context_iri | ef:agent/default_context_mapping | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v4 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v5 |
| ef:activity/change/20260821T1554374006150000/214219 | unit_iri | ef:agent/unit_normalization | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v5 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v6 |
| ef:activity/change/20260821T1554374006150000/221696 | prefLabel | ef:agent/normalize_name_case | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v6 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v7 |
| ef:activity/change/20260821T1554374006150000/229717 | properties | ef:agent/enrich_references | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v7 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v8 |
| ef:activity/change/20260821T1554374006150000/229718 | skos_definition | ef:agent/enrich_references | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v8 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v9 |
| ef:activity/change/20260821T1554374006150000/229719 | references | ef:agent/enrich_references | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v9 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v10 |
| ef:activity/change/20260821T1554374006150000/249050 | properties | ef:agent/rdkit_pre_consensus | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v10 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v11 |
| ef:activity/change/20260821T1554374006150000/254678 | altLabel | ef:agent/chebi_altlabels | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v11 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v12 |
| ef:activity/change/20260821T1554374006150000/262178 | altLabel | ef:agent/consensus_match | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v12 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v13 |
| ef:activity/change/20260821T1554374006150000/262179 | cas_match_labels | ef:agent/consensus_match | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v13 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v14 |
| ef:activity/change/20260821T1554374006150000/274169 | properties | ef:agent/opsin_iupac | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v14 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v15 |
| ef:activity/change/20260821T1554374006150000/280589 | properties | ef:agent/rdkit_post_consensus | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v15 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v16 |
| ef:activity/change/20260821T1554374006150000/292117 | altLabel | ef:agent/dedupe_altlabels | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v16 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v17 |
| ef:activity/change/20260821T1554374006150000/294932 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v17 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v18 |
| ef:activity/change/20260821T1554374006150000/388461 | properties | ef:agent/normalise_property_values | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v18 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v19 |
| ef:activity/change/20260821T1554374006150000/395206 | types | ef:agent/link_flows_to_their_substance | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v19 | ef:flow/0342fe3d-26f4-47c7-860a-5937fac6621a/v20 |