Carbon Dioxide (biogenic)
Everything that changed this flow. Back to the flow
041f5cfe-6556-11dd-ad8b-0800200c9a66
By field
15 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, strip_cross_object_altlabels, strip_qualifier_altlabels | Removed 10 altLabel value(s) lacking qualifier 'biogenic': 'CO(2)', 'CO2', 'E 290', 'E-290', 'E290' … |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=carbondioxide(biogenic)||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'124-38-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c830feb8dfc643a1: {'124-38-9': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| origin_qualifier | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| parent_flow_object_id | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['124-38-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16526']; candidate_pubchem_cids=[280, 10129881]; selected_pubchem_cids=[280]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 3,292 | bootstrap_labels | prefLabel | — | [{"@value":"carbon dioxide (biogenic)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | Bootstrapped prefLabel from legacy name field |
| 3,293 | bootstrap_labels | name | carbon dioxide (biogenic) | — | Purged legacy name field to enforce prefLabel usage |
| 3,294 | bootstrap_labels | synonyms | ["(14c)methanedione","AC1L18VV","AC1Q28J8","AER Fixus","After-damp","Anhydride carbonique","Anhydride, Carbonic","CARBO… | [] | Removed legacy synonyms field in favor of structured labels |
| 28,362 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 28,363 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 214,444 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,851 | normalize_name_case | prefLabel | [{"@value":"carbon dioxide (biogenic)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | [{"@value":"Carbon Dioxide (biogenic)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAtt… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 230,356 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 230,357 | enrich_references | skos_definition | — | [{"@value":"A one-carbon compound with formula CO2 in which the carbon is attached to each oxygen atom by a double bond… | Merged ChEBI/PubChem definitions into skos:definition |
| 230,358 | enrich_references | references | [] | [{"@id":"drugcentral:4256","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['124-38-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16526']; candidate_pubchem_cids=[280, 10129881]; selected_pubchem_cids=[280]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,241 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | rdkit_pre_consensus from 'C(=O)=O'; added: monoisotopic_mass |
| 254,775 | chebi_altlabels | altLabel | [] | [{"@value":"CARBON DIOXIDE","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,427 | strip_cross_object_altlabels | altLabel | [{"@value":"CARBON DIOXIDE","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | [{"@value":"CO(2)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'CARBON DIOXIDE' |
| 264,883 | consensus_match | cas_match_labels | — | {"124-38-9":"exactMatch"} | group_key=carbondioxide(biogenic)||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'124-38-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c830feb8dfc643a1: {'124-38-9': 'exactMatch'} |
| 274,375 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'dioxidocarbon' |
| 280,805 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | rdkit_post_consensus from 'O=C=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,253 | strip_qualifier_altlabels | altLabel | [{"@value":"CO(2)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [] | Removed 10 altLabel value(s) lacking qualifier 'biogenic': 'CO(2)', 'CO2', 'E 290', 'E-290', 'E290' … |
| 295,245 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/041f5cfe-6556-… | associations resolved on the elementary layer |
| 388,671 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO2"],"att… | typed the way the ontology types it |
| 395,489 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 395,490 | link_flows_to_their_substance | origin_qualifier | — | biogenic | the substance's answer, copied onto its flow |
| 395,491 | link_flows_to_their_substance | parent_flow_object_id | — | fo-82a29244dccbaefc | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/3292 | prefLabel | ef:agent/bootstrap_labels | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v0 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v1 |
| ef:activity/change/20260820T0738569779880000/3293 | name | ef:agent/bootstrap_labels | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v1 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v2 |
| ef:activity/change/20260820T0738569779880000/3294 | synonyms | ef:agent/bootstrap_labels | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v2 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v3 |
| ef:activity/change/20260820T0738569779880000/28362 | context | ef:agent/default_context_mapping | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v3 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v4 |
| ef:activity/change/20260820T0738569779880000/28363 | context_iri | ef:agent/default_context_mapping | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v4 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v5 |
| ef:activity/change/20260820T0738569779880000/214444 | unit_iri | ef:agent/unit_normalization | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v5 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v6 |
| ef:activity/change/20260820T0738569779880000/221851 | prefLabel | ef:agent/normalize_name_case | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v6 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v7 |
| ef:activity/change/20260820T0738569779880000/230356 | properties | ef:agent/enrich_references | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v7 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v8 |
| ef:activity/change/20260820T0738569779880000/230357 | skos_definition | ef:agent/enrich_references | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v8 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v9 |
| ef:activity/change/20260820T0738569779880000/230358 | references | ef:agent/enrich_references | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v9 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v10 |
| ef:activity/change/20260820T0738569779880000/249241 | properties | ef:agent/rdkit_pre_consensus | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v10 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v11 |
| ef:activity/change/20260820T0738569779880000/254775 | altLabel | ef:agent/chebi_altlabels | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v11 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v12 |
| ef:activity/change/20260820T0738569779880000/257427 | altLabel | ef:agent/strip_cross_object_altlabels | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v12 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v13 |
| ef:activity/change/20260820T0738569779880000/264883 | cas_match_labels | ef:agent/consensus_match | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v13 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v14 |
| ef:activity/change/20260820T0738569779880000/274375 | properties | ef:agent/opsin_iupac | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v14 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v15 |
| ef:activity/change/20260820T0738569779880000/280805 | properties | ef:agent/rdkit_post_consensus | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v15 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v16 |
| ef:activity/change/20260820T0738569779880000/287253 | altLabel | ef:agent/strip_qualifier_altlabels | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v16 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v17 |
| ef:activity/change/20260820T0738569779880000/295245 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v17 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v18 |
| ef:activity/change/20260820T0738569779880000/388671 | properties | ef:agent/normalise_property_values | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v18 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v19 |
| ef:activity/change/20260820T0738569779880000/395489 | types | ef:agent/link_flows_to_their_substance | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v19 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v20 |
| ef:activity/change/20260820T0738569779880000/395490 | origin_qualifier | ef:agent/link_flows_to_their_substance | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v20 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v21 |
| ef:activity/change/20260820T0738569779880000/395491 | parent_flow_object_id | ef:agent/link_flows_to_their_substance | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v21 | ef:flow/041f5cfe-6556-11dd-ad8b-0800200c9a66/v22 |