Vitamin D2
Everything that changed this flow. Back to the flow
08a91e70-3ddc-11dd-9098-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 62792' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=vitamind2||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-14-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d0cbf93dfb1df91a: {'50-14-6': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['50-14-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28934']; candidate_pubchem_cids=[3249, 5751, 5280793, 5315257, 5353610, 5702050, 6372069, 6536972, 11003810, 12358706, 24112890, 44630173, 58855793, 66577029, 71299657, 71308193, 71311077, 86280331, 87070941, 91555781, 91884638, 122164949, 122172962, 129010310, 154723897, 170922359, 171036043, 172966651]; selected_pubchem_cids=[5280793]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 6,802 | bootstrap_labels | prefLabel | — | [{"@value":"vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Bootstrapped prefLabel from legacy name field |
| 6,803 | bootstrap_labels | name | vitamin D2 | — | Purged legacy name field to enforce prefLabel usage |
| 6,804 | bootstrap_labels | synonyms | ["'Ergosterol irradiated'","(+)-Vitamin D2","(1S,3Z)-3-[(2E)-2-[(1R,3aS,7aR)-1-[(E,2R,5R)-5,6-dimethylhept-3-en-2-yl]-7… | [] | Removed legacy synonyms field in favor of structured labels |
| 32,338 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 32,339 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 215,615 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,663 | normalize_name_case | prefLabel | [{"@value":"vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | [{"@value":"Vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 233,712 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 233,713 | enrich_references | skos_definition | — | [{"@value":"A vitamin D supplement and has been isolated from alfalfa.","@language":"en","provenance":{"prov:wasGenerat… | Merged ChEBI/PubChem definitions into skos:definition |
| 233,714 | enrich_references | references | [] | [{"@id":"agr:IND605848433","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['50-14-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28934']; candidate_pubchem_cids=[3249, 5751, 5280793, 5315257, 5353610, 5702050, 6372069, 6536972, 11003810, 12358706, 24112890, 44630173, 58855793, 66577029, 71299657, 71308193, 71311077, 86280331, 87070941, 91555781, 91884638, 122164949, 122172962, 129010310, 154723897, 170922359, 171036043, 172966651]; selected_pubchem_cids=[5280793]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,205 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | rdkit_pre_consensus from 'CC(C)C(C)C=CC(C)C1CCC2C1(CCCC2=CC=C3CC(CCC3=C)O)C'; added: inchi2d_string, monoisotopic_mass |
| 255,229 | chebi_altlabels | altLabel | [] | [{"@value":"(+)-vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | Added 31 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 273,277 | consensus_match | altLabel | [{"@value":"(+)-vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | [{"@value":"(+)-vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | group_key=vitamind2||dimension=Environmental > media=Ground > geography=Agricultural; cas=50-14-6; added Common Chemistry CAS names as altLabel: (1<em>S</em>,3<em>Z</em>)-4-Methylene-3-[(2<em>E</em>)-2-[(1<em>R</em>,3a<em>S</em>,7a<em>R</em>)-octahydro-7a-methyl-1-[(1<em>R</em>,2<em>E</em>,4<em>R</em>)-1,4,5-trimethyl-2-hexen-1-yl]-4<em>H</em>-inden-4-ylidene]ethylidene]cyclohexanol, 9,10-Secoergosta-5,7,10(19),22-tetraen-3-ol, (3β,5<em>Z</em>,7<em>E</em>,22<em>E</em>)-, 9,10-Secoergosta-5,7,10(19),22-tetraen-3β-ol, <span class="text-smallcaps">D</span>-Arthin, Condocaps, Condol, Crystallina, Cyclohexanol, 4-methylene-3-[(2<em>E</em>)-2-[(1<em>R</em>,3a<em>S</em>,7a<em>R</em>)-octahydro-7a-methyl-1-[(1<em>R</em>,2<em>E</em>,4<em>R</em>)-1,4,5-trimethyl-2-hexen-1-yl]-4<em>H</em>-inden-4-ylidene]ethylidene]-, (1<em>S</em>,3<em>Z</em>)-, Cyclohexanol, 4-methylene-3-[2-[tetrahydro-7a-methyl-1-(1,4,5-trimethyl-2-hexenyl)-4(3a<em>H</em>)-indanylidene]ethylidene]-, D-Tracetten, Davitin, De-Rat Concentrate, Dee-Osterol, Dee-Ronal, Deratol, Detalup, Divit urto, Ergorone, Fortodyl, Hi-Deratol, Infron, Metadee, Mina D<sub>2</sub>, Mulsiferol, Mykostin, NSC 62792, Oleovitamin D, Osteil, Shock-ferol, Uvesterol D, Vio D; object_uuid=fo-d0cbf93dfb1df91a |
| 273,278 | consensus_match | cas_match_labels | — | {"50-14-6":"exactMatch"} | group_key=vitamind2||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-14-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d0cbf93dfb1df91a: {'50-14-6': 'exactMatch'} |
| 275,358 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(1S,3Z)-4-Methylene-3-[(2E)-2-[(1R,3aS,7aR)-octahydro-7a-methyl-1-[(1R,2E,4R)-1,4,5-trimethyl-2-hexen-1-yl]-4H-inden-4-ylidene]ethylidene]cyclohexanol' |
| 281,866 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | rdkit_post_consensus from 'C=C1CC[C@H](O)C/C1=C/C=C1\\CCC[C@]2(C)[C@@H]([C@H](C)/C=C/[C@H](C)C(C)C)CC[C@@H]12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,668 | strip_catalogue_altlabels | altLabel | [{"@value":"(+)-vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | [{"@value":"(+)-vitamin D2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"… | Removed 1 catalogue altLabel value(s): 'NSC 62792' (registry code) |
| 297,228 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… | associations resolved on the elementary layer |
| 389,662 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | typed the way the ontology types it |
| 396,898 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,899 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_25944","rdfs:label":"pesticide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
| 396,900 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C28H44O"],… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/6802 | prefLabel | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v0 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v1 |
| ef:activity/change/20260820T1416470405690000/6803 | name | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v1 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v2 |
| ef:activity/change/20260820T1416470405690000/6804 | synonyms | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v2 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v3 |
| ef:activity/change/20260820T1416470405690000/32338 | context | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v3 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v4 |
| ef:activity/change/20260820T1416470405690000/32339 | context_iri | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v4 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v5 |
| ef:activity/change/20260820T1416470405690000/215615 | unit_iri | ef:agent/unit_normalization | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v5 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v6 |
| ef:activity/change/20260820T1416470405690000/222663 | prefLabel | ef:agent/normalize_name_case | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v6 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v7 |
| ef:activity/change/20260820T1416470405690000/233712 | properties | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v7 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v8 |
| ef:activity/change/20260820T1416470405690000/233713 | skos_definition | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v8 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v9 |
| ef:activity/change/20260820T1416470405690000/233714 | references | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v9 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v10 |
| ef:activity/change/20260820T1416470405690000/250205 | properties | ef:agent/rdkit_pre_consensus | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v10 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v11 |
| ef:activity/change/20260820T1416470405690000/255229 | altLabel | ef:agent/chebi_altlabels | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v11 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v12 |
| ef:activity/change/20260820T1416470405690000/273277 | altLabel | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v12 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v13 |
| ef:activity/change/20260820T1416470405690000/273278 | cas_match_labels | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v13 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v14 |
| ef:activity/change/20260820T1416470405690000/275358 | properties | ef:agent/opsin_iupac | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v14 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v15 |
| ef:activity/change/20260820T1416470405690000/281866 | properties | ef:agent/rdkit_post_consensus | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v15 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v16 |
| ef:activity/change/20260820T1416470405690000/288668 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v16 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v17 |
| ef:activity/change/20260820T1416470405690000/297228 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v17 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v18 |
| ef:activity/change/20260820T1416470405690000/389662 | properties | ef:agent/normalise_property_values | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v18 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v19 |
| ef:activity/change/20260820T1416470405690000/396898 | types | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v19 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v20 |
| ef:activity/change/20260820T1416470405690000/396899 | roles | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v20 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v21 |
| ef:activity/change/20260820T1416470405690000/396900 | properties | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v21 | ef:flow/08a91e70-3ddc-11dd-9098-0050c2490048/v22 |