Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=aminoparathion||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'3735-01-1': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-44f14427d086ea35: {'3735-01-1': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['3735-01-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28055']; candidate_pubchem_cids=[220, 124534]; selected_pubchem_cids=[220]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
7,053 bootstrap_labels prefLabel [{"@value":"aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… Bootstrapped prefLabel from legacy name field
7,054 bootstrap_labels name aminoparathion Purged legacy name field to enforce prefLabel usage
7,055 bootstrap_labels synonyms ["4-diethoxyphosphinothioyloxyaniline","AC1L18QY","AC1Q7FLU","E 605 reduced","O,O-Diethyl O-(4-aminophenyl) phosphoroth… [] Removed legacy synonyms field in favor of structured labels
32,938 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
32,939 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to soil, unspecified
215,700 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,717 normalize_name_case prefLabel [{"@value":"aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… [{"@value":"Aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
233,950 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
233,951 enrich_references skos_definition [{"@value":"An organic thiophosphate that is 4-aminophenol in which the hydroxy group is replaced by a (diethoxyphospho… Merged ChEBI/PubChem definitions into skos:definition
233,952 enrich_references references [] [{"@id":"foodb.food:FDB022660","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedT… Added references with provenance; cas_numbers=['3735-01-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28055']; candidate_pubchem_cids=[220, 124534]; selected_pubchem_cids=[220]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,274 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… rdkit_pre_consensus from 'CCOP(=S)(OCC)OC1=CC=C(C=C1)N'; added: monoisotopic_mass
255,272 chebi_altlabels altLabel [] [{"@value":"4-aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
263,801 consensus_match altLabel [{"@value":"4-aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"4-aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… group_key=aminoparathion||dimension=Environmental > media=Ground > geography=Agricultural; cas=3735-01-1; added Common Chemistry CAS names as altLabel: Phosphorothioic acid, <em>O</em>-(<em>p</em>-aminophenyl) <em>O</em>,<em>O</em>-diethyl ester; object_uuid=fo-44f14427d086ea35
263,802 consensus_match cas_match_labels {"3735-01-1":"exactMatch"} group_key=aminoparathion||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'pubchem']; cas_sources={'3735-01-1': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-44f14427d086ea35: {'3735-01-1': 'exactMatch'}
275,433 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'O,O-diethyl O-(4-aminophenyl) phosphorothioate'
281,946 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… rdkit_post_consensus from 'CCOP(=S)(OCC)Oc1ccc(N)cc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
292,367 dedupe_altlabels altLabel [{"@value":"4-aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… [{"@value":"4-aminoparathion","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo"… Deduplicated altLabel values and removed entries matching prefLabel
297,523 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… associations resolved on the elementary layer
389,742 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C10H16NO3P… typed the way the ontology types it
397,012 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
397,013 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/7053 prefLabel ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v0 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v1
ef:activity/change/20260820T0738569779880000/7054 name ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v1 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v2
ef:activity/change/20260820T0738569779880000/7055 synonyms ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v2 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v3
ef:activity/change/20260820T0738569779880000/32938 context ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v3 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v4
ef:activity/change/20260820T0738569779880000/32939 context_iri ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v4 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v5
ef:activity/change/20260820T0738569779880000/215700 unit_iri ef:agent/unit_normalization ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v5 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v6
ef:activity/change/20260820T0738569779880000/222717 prefLabel ef:agent/normalize_name_case ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v6 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v7
ef:activity/change/20260820T0738569779880000/233950 properties ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v7 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v8
ef:activity/change/20260820T0738569779880000/233951 skos_definition ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v8 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v9
ef:activity/change/20260820T0738569779880000/233952 references ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v9 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v10
ef:activity/change/20260820T0738569779880000/250274 properties ef:agent/rdkit_pre_consensus ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v10 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v11
ef:activity/change/20260820T0738569779880000/255272 altLabel ef:agent/chebi_altlabels ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v11 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v12
ef:activity/change/20260820T0738569779880000/263801 altLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v12 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v13
ef:activity/change/20260820T0738569779880000/263802 cas_match_labels ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v13 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v14
ef:activity/change/20260820T0738569779880000/275433 properties ef:agent/opsin_iupac ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v14 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v15
ef:activity/change/20260820T0738569779880000/281946 properties ef:agent/rdkit_post_consensus ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v15 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v16
ef:activity/change/20260820T0738569779880000/292367 altLabel ef:agent/dedupe_altlabels ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v16 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v17
ef:activity/change/20260820T0738569779880000/297523 concept_associations ef:agent/carry_associations_onto_flows ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v17 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v18
ef:activity/change/20260820T0738569779880000/389742 properties ef:agent/normalise_property_values ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v18 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v19
ef:activity/change/20260820T0738569779880000/397012 types ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v19 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v20
ef:activity/change/20260820T0738569779880000/397013 roles ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v20 ef:flow/08a91e70-3ddc-11dd-91c4-0050c2490048/v21

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