Ammonium
Everything that changed this flow. Back to the flow
08a91e70-3ddc-11dd-91cf-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=ammonium||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'14798-03-9': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e8f4bd71ae8a6d51: {'14798-03-9': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['14798-03-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28938']; candidate_pubchem_cids=[223]; selected_pubchem_cids=[223]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 7,056 | bootstrap_labels | prefLabel | — | [{"@value":"ammonium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Bootstrapped prefLabel from legacy name field |
| 7,057 | bootstrap_labels | name | ammonium | — | Purged legacy name field to enforce prefLabel usage |
| 7,058 | bootstrap_labels | synonyms | ["AC1L18R7","AC1NUTFO","AC1NUTFY","AC1Q1W88","AMMONIUM CATION WITH D","Ammonia ion (NH4+)","Ammonia, ion (NH41+)","Ammo… | [] | Removed legacy synonyms field in favor of structured labels |
| 32,954 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 32,955 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 215,695 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,712 | normalize_name_case | prefLabel | [{"@value":"ammonium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | [{"@value":"Ammonium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 233,945 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 233,946 | enrich_references | skos_definition | — | [{"@value":"An onium cation obtained by protonation of ammonia.","@language":"en","provenance":{"prov:wasGeneratedBy":"… | Merged ChEBI/PubChem definitions into skos:definition |
| 233,947 | enrich_references | references | [] | [{"@id":"gmelin:84","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"consens… | Added references with provenance; cas_numbers=['14798-03-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28938']; candidate_pubchem_cids=[223]; selected_pubchem_cids=[223]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,267 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | rdkit_pre_consensus from '[H][N+]([H])([H])[H]'; added: monoisotopic_mass |
| 255,265 | chebi_altlabels | altLabel | [] | [{"@value":"Ammonium(1+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,799 | consensus_match | altLabel | [{"@value":"Ammonium(1+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | [{"@value":"Ammonium(1+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | group_key=ammonium||dimension=Environmental > media=Air > strata=Long-term; cas=14798-03-9; added Common Chemistry CAS names as altLabel: Ammonia ion (NH<sub>4</sub><sup>+</sup>), Ammonia, ion (NH<sub>4</sub><sup>1+</sup>), Ammonium (NH<sub>4</sub><sup>+</sup>), Ammonium ion (NH<sub>4</sub><sup>+</sup>), Ammonium ion(+), Ammonium ion(1+), Ammonium nitrogen ((NH<sub>4</sub>)N); object_uuid=fo-e8f4bd71ae8a6d51 |
| 263,800 | consensus_match | cas_match_labels | — | {"14798-03-9":"exactMatch"} | group_key=ammonium||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'pubchem']; cas_sources={'14798-03-9': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e8f4bd71ae8a6d51: {'14798-03-9': 'exactMatch'} |
| 275,413 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Ammonium' |
| 281,928 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | rdkit_post_consensus from '[NH4+]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,345 | dedupe_altlabels | altLabel | [{"@value":"Ammonium(1+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | [{"@value":"Ammonium(1+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"co… | Deduplicated altLabel values and removed entries matching prefLabel |
| 297,511 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… | associations resolved on the elementary layer |
| 389,721 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H4N","H4N+… | typed the way the ontology types it |
| 396,992 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularCation"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/7056 | prefLabel | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v0 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v1 |
| ef:activity/change/20260821T1554374006150000/7057 | name | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v1 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v2 |
| ef:activity/change/20260821T1554374006150000/7058 | synonyms | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v2 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v3 |
| ef:activity/change/20260821T1554374006150000/32954 | context | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v3 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v4 |
| ef:activity/change/20260821T1554374006150000/32955 | context_iri | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v4 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v5 |
| ef:activity/change/20260821T1554374006150000/215695 | unit_iri | ef:agent/unit_normalization | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v5 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v6 |
| ef:activity/change/20260821T1554374006150000/222712 | prefLabel | ef:agent/normalize_name_case | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v6 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v7 |
| ef:activity/change/20260821T1554374006150000/233945 | properties | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v7 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v8 |
| ef:activity/change/20260821T1554374006150000/233946 | skos_definition | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v8 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v9 |
| ef:activity/change/20260821T1554374006150000/233947 | references | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v9 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v10 |
| ef:activity/change/20260821T1554374006150000/250267 | properties | ef:agent/rdkit_pre_consensus | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v10 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v11 |
| ef:activity/change/20260821T1554374006150000/255265 | altLabel | ef:agent/chebi_altlabels | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v11 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v12 |
| ef:activity/change/20260821T1554374006150000/263799 | altLabel | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v12 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v13 |
| ef:activity/change/20260821T1554374006150000/263800 | cas_match_labels | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v13 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v14 |
| ef:activity/change/20260821T1554374006150000/275413 | properties | ef:agent/opsin_iupac | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v14 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v15 |
| ef:activity/change/20260821T1554374006150000/281928 | properties | ef:agent/rdkit_post_consensus | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v15 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v16 |
| ef:activity/change/20260821T1554374006150000/292345 | altLabel | ef:agent/dedupe_altlabels | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v16 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v17 |
| ef:activity/change/20260821T1554374006150000/297511 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v17 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v18 |
| ef:activity/change/20260821T1554374006150000/389721 | properties | ef:agent/normalise_property_values | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v18 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v19 |
| ef:activity/change/20260821T1554374006150000/396992 | types | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v19 | ef:flow/08a91e70-3ddc-11dd-91cf-0050c2490048/v20 |