Formaldehyde
Everything that changed this flow. Back to the flow
08a91e70-3ddc-11dd-9423-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 4 catalogue altLabel value(s): 'FM 282' (grade code), 'FS 850A' (grade code), 'Floguard 1015' (trade name), 'NSC 298885' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=formaldehyde||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-00-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9e47ecc797d65d67: {'50-00-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['50-00-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16842']; candidate_pubchem_cids=[712, 22134108]; selected_pubchem_cids=[712]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 7,397 | bootstrap_labels | prefLabel | — | [{"@value":"formaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Bootstrapped prefLabel from legacy name field |
| 7,398 | bootstrap_labels | name | formaldehyde | — | Purged legacy name field to enforce prefLabel usage |
| 7,399 | bootstrap_labels | synonyms | ["1HG84L3525","AB1002009","AB1002010","AC1L19UQ","Aldacide","Aldehyd","Aldehyd mravenci","Aldehyde formique","Aldehyde… | [] | Removed legacy synonyms field in favor of structured labels |
| 34,108 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 34,109 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 215,808 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,807 | normalize_name_case | prefLabel | [{"@value":"formaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | [{"@value":"Formaldehyde","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 234,267 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 234,268 | enrich_references | skos_definition | — | [{"@value":"An aldehyde resulting from the formal oxidation of methanol.","@language":"en","provenance":{"prov:wasGener… | Merged ChEBI/PubChem definitions into skos:definition |
| 234,269 | enrich_references | references | [] | [{"@id":"drugcentral:3244","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['50-00-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16842']; candidate_pubchem_cids=[712, 22134108]; selected_pubchem_cids=[712]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,357 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | rdkit_pre_consensus from 'C=O'; added: monoisotopic_mass |
| 255,350 | chebi_altlabels | altLabel | [] | [{"@value":"FORMALIN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,279 | consensus_match | altLabel | [{"@value":"FORMALIN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | [{"@value":"FORMALIN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | group_key=formaldehyde||dimension=Environmental > media=Ground > geography=Agricultural; cas=50-00-0; added Common Chemistry CAS names as altLabel: BFV, F-gen, FM 282, FS 850A, Fannoform, Floguard 1015, Fordor, Formaldehyde-<sup>12</sup><em>C</em>, Formalin LM, Formalin Taisei, Formalith, Formic aldehyde, Formol, Fyde, Lysoform, MeSH ID: D005557, Methaldehyde, Methyl aldehyde, Morbicid, NSC 298885, Optilyse, Oxymethylene, Paraform, Sigma-F 8775, Superlysoform; object_uuid=fo-9e47ecc797d65d67 |
| 267,280 | consensus_match | cas_match_labels | — | {"50-00-0":"exactMatch"} | group_key=formaldehyde||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'50-00-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9e47ecc797d65d67: {'50-00-0': 'exactMatch'} |
| 275,515 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Formaldehyde' |
| 282,035 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | rdkit_post_consensus from 'C=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,781 | strip_catalogue_altlabels | altLabel | [{"@value":"FORMALIN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | [{"@value":"FORMALIN","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | Removed 4 catalogue altLabel value(s): 'FM 282' (grade code), 'FS 850A' (grade code), 'Floguard 1015' (trade name), 'NSC 298885' (registry code) |
| 298,088 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… | associations resolved on the elementary layer |
| 389,826 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH2O"],"at… | typed the way the ontology types it |
| 397,163 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 397,164 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/7397 | prefLabel | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v0 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v1 |
| ef:activity/change/20260822T0600486828500000/7398 | name | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v1 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v2 |
| ef:activity/change/20260822T0600486828500000/7399 | synonyms | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v2 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v3 |
| ef:activity/change/20260822T0600486828500000/34108 | context | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v3 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v4 |
| ef:activity/change/20260822T0600486828500000/34109 | context_iri | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v4 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v5 |
| ef:activity/change/20260822T0600486828500000/215808 | unit_iri | ef:agent/unit_normalization | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v5 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v6 |
| ef:activity/change/20260822T0600486828500000/222807 | prefLabel | ef:agent/normalize_name_case | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v6 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v7 |
| ef:activity/change/20260822T0600486828500000/234267 | properties | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v7 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v8 |
| ef:activity/change/20260822T0600486828500000/234268 | skos_definition | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v8 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v9 |
| ef:activity/change/20260822T0600486828500000/234269 | references | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v9 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v10 |
| ef:activity/change/20260822T0600486828500000/250357 | properties | ef:agent/rdkit_pre_consensus | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v10 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v11 |
| ef:activity/change/20260822T0600486828500000/255350 | altLabel | ef:agent/chebi_altlabels | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v11 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v12 |
| ef:activity/change/20260822T0600486828500000/267279 | altLabel | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v12 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v13 |
| ef:activity/change/20260822T0600486828500000/267280 | cas_match_labels | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v13 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v14 |
| ef:activity/change/20260822T0600486828500000/275515 | properties | ef:agent/opsin_iupac | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v14 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v15 |
| ef:activity/change/20260822T0600486828500000/282035 | properties | ef:agent/rdkit_post_consensus | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v15 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v16 |
| ef:activity/change/20260822T0600486828500000/288781 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v16 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v17 |
| ef:activity/change/20260822T0600486828500000/298088 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v17 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v18 |
| ef:activity/change/20260822T0600486828500000/389826 | properties | ef:agent/normalise_property_values | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v18 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v19 |
| ef:activity/change/20260822T0600486828500000/397163 | types | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v19 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v20 |
| ef:activity/change/20260822T0600486828500000/397164 | roles | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v20 | ef:flow/08a91e70-3ddc-11dd-9423-0050c2490048/v21 |