Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 7 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_authoritative, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
prefLabel 3 bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case element name from the flow object: Gallium
altLabel 2 chebi_altlabels, consensus_match group_key=gallium||dimension=Resource > media=Ground; cas=7440-55-3; added Common Chemistry CAS names as altLabel: Gallium element, MeSH ID: D005708; object_uuid=fo-645a6f87588fd57e
cas_match_labels 1 consensus_match group_key=gallium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-55-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-645a6f87588fd57e: {'7440-55-3': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 231-163-8 from CAS 7440-55-3
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['7440-55-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49631']; candidate_pubchem_cids=[23983, 5360835, 101094643]; selected_pubchem_cids=[5360835]; formula_similarity_expected=['Ga']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
7,414 bootstrap_labels prefLabel [{"@value":"gallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Bootstrapped prefLabel from legacy name field
7,415 bootstrap_labels name gallium Purged legacy name field to enforce prefLabel usage
7,416 bootstrap_labels synonyms ["AC1NSETH","Gallium, elemental","LTBB002467"] [] Removed legacy synonyms field in favor of structured labels
34,156 default_context_mapping context {"dimension":"Resource","media":"Ground"} Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
34,157 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/reso-grou Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
215,819 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,818 normalize_name_case prefLabel [{"@value":"gallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Gallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
226,822 ec_cross_check ec_numbers [] ["231-163-8"] Resolved from EC-inventory: 231-163-8 from CAS 7440-55-3
234,290 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ga"],"atte… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
234,291 enrich_references skos_definition [{"@value":"A metallic element predicted as eka-aluminium by Mendeleev in 1870 and discovered by Paul-Emile Lecoq de Bo… Merged ChEBI/PubChem definitions into skos:definition
234,292 enrich_references references [] [{"@id":"https://chem.echa.europa.eu/100.028.330","provenance":{"prov:wasGeneratedBy":"enrich_references.pubchem_identi… Added references with provenance; cas_numbers=['7440-55-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_49631']; candidate_pubchem_cids=[23983, 5360835, 101094643]; selected_pubchem_cids=[5360835]; formula_similarity_expected=['Ga']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,370 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ga"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ga"],"atte… rdkit_pre_consensus from '[Ga]'; added: monoisotopic_mass
255,363 chebi_altlabels altLabel [] [{"@value":"31Ga","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
267,367 consensus_match altLabel [{"@value":"31Ga","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"31Ga","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… group_key=gallium||dimension=Resource > media=Ground; cas=7440-55-3; added Common Chemistry CAS names as altLabel: Gallium element, MeSH ID: D005708; object_uuid=fo-645a6f87588fd57e
267,368 consensus_match cas_match_labels {"7440-55-3":"exactMatch"} group_key=gallium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-55-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-645a6f87588fd57e: {'7440-55-3': 'exactMatch'}
275,540 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ga"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ga"],"atte… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Gallium'
279,769 rdkit_authoritative properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ga"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… rdkit_authoritative: set definitive structural data from unique InChI
282,060 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… rdkit_post_consensus from '[Ga]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
298,132 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… associations resolved on the elementary layer
389,854 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… typed the way the ontology types it
397,195 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalElement"] the substance's answer, copied onto its flow
397,196 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… the substance's answer, copied onto its flow
403,796 flow_layers.pubchem_element_enrichment prefLabel [{"@value":"Gallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… [{"@value":"Gallium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichm… element name from the flow object: Gallium

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/7414 prefLabel ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v0 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v1
ef:activity/change/20260820T1416470405690000/7415 name ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v1 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v2
ef:activity/change/20260820T1416470405690000/7416 synonyms ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v2 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v3
ef:activity/change/20260820T1416470405690000/34156 context ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v3 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v4
ef:activity/change/20260820T1416470405690000/34157 context_iri ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v4 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v5
ef:activity/change/20260820T1416470405690000/215819 unit_iri ef:agent/unit_normalization ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v5 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v6
ef:activity/change/20260820T1416470405690000/222818 prefLabel ef:agent/normalize_name_case ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v6 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v7
ef:activity/change/20260820T1416470405690000/226822 ec_numbers ef:agent/ec_cross_check ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v7 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v8
ef:activity/change/20260820T1416470405690000/234290 properties ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v8 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v9
ef:activity/change/20260820T1416470405690000/234291 skos_definition ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v9 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v10
ef:activity/change/20260820T1416470405690000/234292 references ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v10 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v11
ef:activity/change/20260820T1416470405690000/250370 properties ef:agent/rdkit_pre_consensus ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v11 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v12
ef:activity/change/20260820T1416470405690000/255363 altLabel ef:agent/chebi_altlabels ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v12 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v13
ef:activity/change/20260820T1416470405690000/267367 altLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v13 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v14
ef:activity/change/20260820T1416470405690000/267368 cas_match_labels ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v14 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v15
ef:activity/change/20260820T1416470405690000/275540 properties ef:agent/opsin_iupac ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v15 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v16
ef:activity/change/20260820T1416470405690000/279769 properties ef:agent/rdkit_authoritative ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v16 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v17
ef:activity/change/20260820T1416470405690000/282060 properties ef:agent/rdkit_post_consensus ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v17 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v18
ef:activity/change/20260820T1416470405690000/298132 concept_associations ef:agent/carry_associations_onto_flows ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v18 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v19
ef:activity/change/20260820T1416470405690000/389854 properties ef:agent/normalise_property_values ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v19 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v20
ef:activity/change/20260820T1416470405690000/397195 types ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v20 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v21
ef:activity/change/20260820T1416470405690000/397196 properties ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v21 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v22
ef:activity/change/20260820T1416470405690000/403796 prefLabel ef:agent/flow_layers.pubchem_element_enrichment ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v22 ef:flow/08a91e70-3ddc-11dd-9438-0050c2490048/v23

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