Sodium
Everything that changed this flow. Back to the flow
08a91e70-3ddc-11dd-9506-0050c2490048
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Sodium |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=sodium||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=7440-23-5; added Common Chemistry CAS names as altLabel: Atomic sodium, MeSH ID: D012964, Sodium atom, Sodium metal, Sodium-23; object_uuid=fo-4068b74896f550fc |
| cas_match_labels | 1 | consensus_match | group_key=sodium||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-23-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4068b74896f550fc: {'7440-23-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 231-132-9 from CAS 7440-23-5 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7440-23-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_26708']; candidate_pubchem_cids=[923, 5360545, 86590530]; selected_pubchem_cids=[5360545]; formula_similarity_expected=['Na']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 7,396 | bootstrap_labels | prefLabel | — | [{"@value":"sodium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Bootstrapped prefLabel from legacy name field |
| 7,397 | bootstrap_labels | name | sodium | — | Purged legacy name field to enforce prefLabel usage |
| 7,398 | bootstrap_labels | synonyms | ["11Na","AB1003981","AC1NSENP","AC1Q1W6R","Ion Level, Sodium","LTBB002852","Level, Sodium Ion","NAH 80","Natrium","Natu… | [] | Removed legacy synonyms field in favor of structured labels |
| 34,560 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 34,561 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term) |
| 215,813 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,812 | normalize_name_case | prefLabel | [{"@value":"sodium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Sodium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 226,820 | ec_cross_check | ec_numbers | [] | ["231-132-9"] | Resolved from EC-inventory: 231-132-9 from CAS 7440-23-5 |
| 234,272 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 234,273 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 234,274 | enrich_references | references | [] | [{"@id":"gmelin:16221","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['7440-23-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_26708']; candidate_pubchem_cids=[923, 5360545, 86590530]; selected_pubchem_cids=[5360545]; formula_similarity_expected=['Na']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,364 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | rdkit_pre_consensus from '[Na]'; added: monoisotopic_mass |
| 255,358 | chebi_altlabels | altLabel | [] | [{"@value":"11Na","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 271,675 | consensus_match | altLabel | [{"@value":"11Na","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"11Na","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=sodium||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=7440-23-5; added Common Chemistry CAS names as altLabel: Atomic sodium, MeSH ID: D012964, Sodium atom, Sodium metal, Sodium-23; object_uuid=fo-4068b74896f550fc |
| 271,676 | consensus_match | cas_match_labels | — | {"7440-23-5":"exactMatch"} | group_key=sodium||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-23-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-4068b74896f550fc: {'7440-23-5': 'exactMatch'} |
| 275,535 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Sodium' |
| 282,054 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | rdkit_post_consensus from '[Na]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 298,330 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… | associations resolved on the elementary layer |
| 389,848 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | typed the way the ontology types it |
| 397,185 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 397,186 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na"],"atte… | the substance's answer, copied onto its flow |
| 403,794 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Sodium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Sodium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichme… | element name from the flow object: Sodium |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/7396 | prefLabel | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v0 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v1 |
| ef:activity/change/20260820T1416470405690000/7397 | name | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v1 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v2 |
| ef:activity/change/20260820T1416470405690000/7398 | synonyms | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v2 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v3 |
| ef:activity/change/20260820T1416470405690000/34560 | context | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v3 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v4 |
| ef:activity/change/20260820T1416470405690000/34561 | context_iri | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v4 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v5 |
| ef:activity/change/20260820T1416470405690000/215813 | unit_iri | ef:agent/unit_normalization | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v5 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v6 |
| ef:activity/change/20260820T1416470405690000/222812 | prefLabel | ef:agent/normalize_name_case | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v6 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v7 |
| ef:activity/change/20260820T1416470405690000/226820 | ec_numbers | ef:agent/ec_cross_check | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v7 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v8 |
| ef:activity/change/20260820T1416470405690000/234272 | properties | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v8 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v9 |
| ef:activity/change/20260820T1416470405690000/234273 | skos_definition | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v9 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v10 |
| ef:activity/change/20260820T1416470405690000/234274 | references | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v10 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v11 |
| ef:activity/change/20260820T1416470405690000/250364 | properties | ef:agent/rdkit_pre_consensus | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v11 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v12 |
| ef:activity/change/20260820T1416470405690000/255358 | altLabel | ef:agent/chebi_altlabels | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v12 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v13 |
| ef:activity/change/20260820T1416470405690000/271675 | altLabel | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v13 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v14 |
| ef:activity/change/20260820T1416470405690000/271676 | cas_match_labels | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v14 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v15 |
| ef:activity/change/20260820T1416470405690000/275535 | properties | ef:agent/opsin_iupac | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v15 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v16 |
| ef:activity/change/20260820T1416470405690000/282054 | properties | ef:agent/rdkit_post_consensus | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v16 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v17 |
| ef:activity/change/20260820T1416470405690000/298330 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v17 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v18 |
| ef:activity/change/20260820T1416470405690000/389848 | properties | ef:agent/normalise_property_values | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v18 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v19 |
| ef:activity/change/20260820T1416470405690000/397185 | types | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v19 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v20 |
| ef:activity/change/20260820T1416470405690000/397186 | properties | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v20 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v21 |
| ef:activity/change/20260820T1416470405690000/403794 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v21 | ef:flow/08a91e70-3ddc-11dd-9506-0050c2490048/v22 |