Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 6 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
prefLabel 3 bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case element name from the flow object: Thallium
altLabel 2 chebi_altlabels, consensus_match group_key=thallium||dimension=Environmental > media=Ground > geography=Agricultural; cas=7440-28-0; added Common Chemistry CAS names as altLabel: MeSH ID: D013793, Ramor, Thallium element; object_uuid=fo-d94072122a6ce33a
cas_match_labels 1 consensus_match group_key=thallium||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-28-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d94072122a6ce33a: {'7440-28-0': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 231-138-1 from CAS 7440-28-0
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['7440-28-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30440']; candidate_pubchem_cids=[23959, 67634, 105005, 167263, 5359464, 101591516]; selected_pubchem_cids=[]; formula_similarity_expected=['Tl']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
8,128 bootstrap_labels prefLabel [{"@value":"thallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Bootstrapped prefLabel from legacy name field
8,129 bootstrap_labels name thallium Purged legacy name field to enforce prefLabel usage
8,140 bootstrap_labels synonyms ["81Tl","AC1NSE0D","LTBB003660","Ramor","TL","Thallium, elemental","Thallium, elemental and soluble compounds","Thalliu… [] Removed legacy synonyms field in favor of structured labels
36,706 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
36,707 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
216,055 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
223,016 normalize_name_case prefLabel [{"@value":"thallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… [{"@value":"Thallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
226,889 ec_cross_check ec_numbers [] ["231-138-1"] Resolved from EC-inventory: 231-138-1 from CAS 7440-28-0
234,959 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=0)
234,960 enrich_references skos_definition [{"@value":"A metallic element first identified and named from the brilliant green line in its flame spectrum (from Gre… Merged ChEBI/PubChem definitions into skos:definition
234,961 enrich_references references [] [{"@id":"gmelin:16308","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['7440-28-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30440']; candidate_pubchem_cids=[23959, 67634, 105005, 167263, 5359464, 101591516]; selected_pubchem_cids=[]; formula_similarity_expected=['Tl']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,553 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… rdkit_pre_consensus from '[Tl]'; added: monoisotopic_mass
255,515 chebi_altlabels altLabel [] [{"@value":"81Tl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
272,557 consensus_match altLabel [{"@value":"81Tl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"81Tl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… group_key=thallium||dimension=Environmental > media=Ground > geography=Agricultural; cas=7440-28-0; added Common Chemistry CAS names as altLabel: MeSH ID: D013793, Ramor, Thallium element; object_uuid=fo-d94072122a6ce33a
272,558 consensus_match cas_match_labels {"7440-28-0":"exactMatch"} group_key=thallium||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-28-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d94072122a6ce33a: {'7440-28-0': 'exactMatch'}
275,732 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Thallium'
282,283 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… rdkit_post_consensus from '[Tl]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
299,399 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… associations resolved on the elementary layer
390,071 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… typed the way the ontology types it
397,528 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalElement"] the substance's answer, copied onto its flow
397,529 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tl"],"atte… the substance's answer, copied onto its flow
403,817 flow_layers.pubchem_element_enrichment prefLabel [{"@value":"Thallium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… [{"@value":"Thallium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrich… element name from the flow object: Thallium

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1416470405690000/8128 prefLabel ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v0 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v1
ef:activity/change/20260820T1416470405690000/8129 name ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v1 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v2
ef:activity/change/20260820T1416470405690000/8140 synonyms ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v2 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v3
ef:activity/change/20260820T1416470405690000/36706 context ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v3 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v4
ef:activity/change/20260820T1416470405690000/36707 context_iri ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v4 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v5
ef:activity/change/20260820T1416470405690000/216055 unit_iri ef:agent/unit_normalization ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v5 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v6
ef:activity/change/20260820T1416470405690000/223016 prefLabel ef:agent/normalize_name_case ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v6 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v7
ef:activity/change/20260820T1416470405690000/226889 ec_numbers ef:agent/ec_cross_check ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v7 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v8
ef:activity/change/20260820T1416470405690000/234959 properties ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v8 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v9
ef:activity/change/20260820T1416470405690000/234960 skos_definition ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v9 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v10
ef:activity/change/20260820T1416470405690000/234961 references ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v10 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v11
ef:activity/change/20260820T1416470405690000/250553 properties ef:agent/rdkit_pre_consensus ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v11 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v12
ef:activity/change/20260820T1416470405690000/255515 altLabel ef:agent/chebi_altlabels ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v12 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v13
ef:activity/change/20260820T1416470405690000/272557 altLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v13 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v14
ef:activity/change/20260820T1416470405690000/272558 cas_match_labels ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v14 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v15
ef:activity/change/20260820T1416470405690000/275732 properties ef:agent/opsin_iupac ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v15 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v16
ef:activity/change/20260820T1416470405690000/282283 properties ef:agent/rdkit_post_consensus ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v16 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v17
ef:activity/change/20260820T1416470405690000/299399 concept_associations ef:agent/carry_associations_onto_flows ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v17 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v18
ef:activity/change/20260820T1416470405690000/390071 properties ef:agent/normalise_property_values ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v18 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v19
ef:activity/change/20260820T1416470405690000/397528 types ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v19 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v20
ef:activity/change/20260820T1416470405690000/397529 properties ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v20 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v21
ef:activity/change/20260820T1416470405690000/403817 prefLabel ef:agent/flow_layers.pubchem_element_enrichment ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v21 ef:flow/08a91e70-3ddc-11dd-996b-0050c2490048/v22

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