Manganese
Everything that changed this flow. Back to the flow
08a91e70-3ddc-11dd-9bcc-0050c2490048
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Manganese |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=manganese||dimension=Environmental > media=Ground > geography=Agricultural; cas=7439-96-5; added Common Chemistry CAS names as altLabel: Amiplus Mn, Basfoliar Manganes, Cutaval, Ele-Max Manganese, JIS-G 1213, MNE 06PB, Manganese element, Manganese-55, MeSH ID: D008345, Oligo-Mn, SuperMan, Teprosyn Mn; object_uuid=fo-399a338738afcc79 |
| cas_match_labels | 1 | consensus_match | group_key=manganese||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7439-96-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-399a338738afcc79: {'7439-96-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7439-96-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_18291', 'http://purl.obolibrary.org/obo/CHEBI_35154']; candidate_pubchem_cids=[23930, 27854]; selected_pubchem_cids=[23930]; formula_similarity_expected=['Mn']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 8,413 | bootstrap_labels | prefLabel | — | [{"@value":"manganese","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 8,414 | bootstrap_labels | name | manganese | — | Purged legacy name field to enforce prefLabel usage |
| 8,415 | bootstrap_labels | synonyms | ["(52mn)manganese","(53mn)manganese","(54mn)manganese","(56mn)manganese","25Mn","AC1L2N3C","Colloidal manganese","Cutav… | [] | Removed legacy synonyms field in favor of structured labels |
| 37,920 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 37,921 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified |
| 216,145 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,088 | normalize_name_case | prefLabel | [{"@value":"manganese","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Manganese","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 235,225 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 235,226 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 235,227 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J281.667I","provenance":{"prov:wasGeneratedBy":"enrich_referen… | Added references with provenance; cas_numbers=['7439-96-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_18291', 'http://purl.obolibrary.org/obo/CHEBI_35154']; candidate_pubchem_cids=[23930, 27854]; selected_pubchem_cids=[23930]; formula_similarity_expected=['Mn']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,632 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | rdkit_pre_consensus from '[Mn]'; added: monoisotopic_mass |
| 255,565 | chebi_altlabels | altLabel | [] | [{"@value":"25Mn","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 9 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 268,539 | consensus_match | altLabel | [{"@value":"25Mn","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"25Mn","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=manganese||dimension=Environmental > media=Ground > geography=Agricultural; cas=7439-96-5; added Common Chemistry CAS names as altLabel: Amiplus Mn, Basfoliar Manganes, Cutaval, Ele-Max Manganese, JIS-G 1213, MNE 06PB, Manganese element, Manganese-55, MeSH ID: D008345, Oligo-Mn, SuperMan, Teprosyn Mn; object_uuid=fo-399a338738afcc79 |
| 268,540 | consensus_match | cas_match_labels | — | {"7439-96-5":"exactMatch"} | group_key=manganese||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7439-96-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-399a338738afcc79: {'7439-96-5': 'exactMatch'} |
| 275,814 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Manganese' |
| 282,371 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | rdkit_post_consensus from '[Mn]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 300,005 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… | associations resolved on the elementary layer |
| 390,156 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | typed the way the ontology types it |
| 397,647 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 397,648 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn"],"atte… | the substance's answer, copied onto its flow |
| 403,821 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Manganese","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Manganese","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enric… | element name from the flow object: Manganese |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/8413 | prefLabel | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v0 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v1 |
| ef:activity/change/20260820T0738569779880000/8414 | name | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v1 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v2 |
| ef:activity/change/20260820T0738569779880000/8415 | synonyms | ef:agent/bootstrap_labels | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v2 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v3 |
| ef:activity/change/20260820T0738569779880000/37920 | context | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v3 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v4 |
| ef:activity/change/20260820T0738569779880000/37921 | context_iri | ef:agent/default_context_mapping | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v4 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v5 |
| ef:activity/change/20260820T0738569779880000/216145 | unit_iri | ef:agent/unit_normalization | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v5 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v6 |
| ef:activity/change/20260820T0738569779880000/223088 | prefLabel | ef:agent/normalize_name_case | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v6 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v7 |
| ef:activity/change/20260820T0738569779880000/235225 | properties | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v7 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v8 |
| ef:activity/change/20260820T0738569779880000/235226 | skos_definition | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v8 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v9 |
| ef:activity/change/20260820T0738569779880000/235227 | references | ef:agent/enrich_references | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v9 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v10 |
| ef:activity/change/20260820T0738569779880000/250632 | properties | ef:agent/rdkit_pre_consensus | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v10 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v11 |
| ef:activity/change/20260820T0738569779880000/255565 | altLabel | ef:agent/chebi_altlabels | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v11 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v12 |
| ef:activity/change/20260820T0738569779880000/268539 | altLabel | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v12 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v13 |
| ef:activity/change/20260820T0738569779880000/268540 | cas_match_labels | ef:agent/consensus_match | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v13 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v14 |
| ef:activity/change/20260820T0738569779880000/275814 | properties | ef:agent/opsin_iupac | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v14 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v15 |
| ef:activity/change/20260820T0738569779880000/282371 | properties | ef:agent/rdkit_post_consensus | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v15 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v16 |
| ef:activity/change/20260820T0738569779880000/300005 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v16 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v17 |
| ef:activity/change/20260820T0738569779880000/390156 | properties | ef:agent/normalise_property_values | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v17 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v18 |
| ef:activity/change/20260820T0738569779880000/397647 | types | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v18 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v19 |
| ef:activity/change/20260820T0738569779880000/397648 | properties | ef:agent/link_flows_to_their_substance | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v19 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v20 |
| ef:activity/change/20260820T0738569779880000/403821 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v20 | ef:flow/08a91e70-3ddc-11dd-9bcc-0050c2490048/v21 |