Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 408823' (registry code)
cas_match_labels 1 consensus_match group_key=7,12-dimethylbenz[a]anthracene||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-97-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d3ee9bc007b38012: {'57-97-6': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 200-359-5 from CAS 57-97-6
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
prefLabel 1 bootstrap_labels Bootstrapped prefLabel from legacy name field
references 1 enrich_references Added references with provenance; cas_numbers=['57-97-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_254496']; candidate_pubchem_cids=[6001, 42742, 964403, 12077796]; selected_pubchem_cids=[6001]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

20
# Step Field From To Why
8,477 bootstrap_labels prefLabel [{"@value":"7,12-dimethylbenz[a]anthracene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:w… Bootstrapped prefLabel from legacy name field
8,478 bootstrap_labels name 7,12-dimethylbenz[a]anthracene Purged legacy name field to enforce prefLabel usage
8,479 bootstrap_labels synonyms ["1,4-Dimethyl-2,3-benzophenanthrene","1,4-Dimethyl-2,3-benzphenanthrene","6,7-Dimethyl-1,2-benzanthracene","7,12 Dimet… [] Removed legacy synonyms field in favor of structured labels
38,304 default_context_mapping context {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
38,305 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-grou-agri Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil
216,161 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
226,892 ec_cross_check ec_numbers [] ["200-359-5"] Resolved from EC-inventory: 200-359-5 from CAS 57-97-6
235,282 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
235,283 enrich_references skos_definition [{"@value":"A tetraphene having methyl substituents at the 7- and 12-positions. It is a potent carcinogen and is presen… Merged ChEBI/PubChem definitions into skos:definition
235,284 enrich_references references [] [{"@id":"beilstein:1912135","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['57-97-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_254496']; candidate_pubchem_cids=[6001, 42742, 964403, 12077796]; selected_pubchem_cids=[6001]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,645 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… rdkit_pre_consensus from 'CC1=C2C=CC3=CC=CC=C3C2=C(C4=CC=CC=C14)C'; added: monoisotopic_mass
255,567 chebi_altlabels altLabel [] [{"@value":"1,4-Dimethyl-2,3-benzphenanthrene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… Added 13 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
263,293 consensus_match altLabel [{"@value":"1,4-Dimethyl-2,3-benzphenanthrene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… [{"@value":"1,4-Dimethyl-2,3-benzphenanthrene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… group_key=7,12-dimethylbenz[a]anthracene||dimension=Environmental > media=Ground > geography=Agricultural; cas=57-97-6; added Common Chemistry CAS names as altLabel: 9,10-Dimethyl-1,2-benz[<em>a</em>]anthracene, Benz[<em>a</em>]anthracene, 7,12-dimethyl-, DMBA (pharmaceutical), DMBAn, MeSH ID: D015127, NSC 408823; object_uuid=fo-d3ee9bc007b38012
263,294 consensus_match cas_match_labels {"57-97-6":"exactMatch"} group_key=7,12-dimethylbenz[a]anthracene||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'57-97-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d3ee9bc007b38012: {'57-97-6': 'exactMatch'}
275,811 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '7,12-dimethylbenz[a]anthracene'
282,372 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… rdkit_post_consensus from 'Cc1c2ccccc2c(C)c2c1ccc1ccccc12'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,000 strip_catalogue_altlabels altLabel [{"@value":"1,4-Dimethyl-2,3-benzphenanthrene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… [{"@value":"1,4-Dimethyl-2,3-benzphenanthrene","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov… Removed 1 catalogue altLabel value(s): 'NSC 408823' (registry code)
300,177 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… associations resolved on the elementary layer
390,154 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H16"],"… typed the way the ontology types it
397,651 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

20 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/8477 prefLabel ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v0 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v1
ef:activity/change/20260821T1554374006150000/8478 name ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v1 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v2
ef:activity/change/20260821T1554374006150000/8479 synonyms ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v2 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v3
ef:activity/change/20260821T1554374006150000/38304 context ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v3 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v4
ef:activity/change/20260821T1554374006150000/38305 context_iri ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v4 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v5
ef:activity/change/20260821T1554374006150000/216161 unit_iri ef:agent/unit_normalization ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v5 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v6
ef:activity/change/20260821T1554374006150000/226892 ec_numbers ef:agent/ec_cross_check ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v6 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v7
ef:activity/change/20260821T1554374006150000/235282 properties ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v7 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v8
ef:activity/change/20260821T1554374006150000/235283 skos_definition ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v8 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v9
ef:activity/change/20260821T1554374006150000/235284 references ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v9 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v10
ef:activity/change/20260821T1554374006150000/250645 properties ef:agent/rdkit_pre_consensus ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v10 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v11
ef:activity/change/20260821T1554374006150000/255567 altLabel ef:agent/chebi_altlabels ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v11 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v12
ef:activity/change/20260821T1554374006150000/263293 altLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v12 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v13
ef:activity/change/20260821T1554374006150000/263294 cas_match_labels ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v13 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v14
ef:activity/change/20260821T1554374006150000/275811 properties ef:agent/opsin_iupac ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v14 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v15
ef:activity/change/20260821T1554374006150000/282372 properties ef:agent/rdkit_post_consensus ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v15 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v16
ef:activity/change/20260821T1554374006150000/289000 altLabel ef:agent/strip_catalogue_altlabels ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v16 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v17
ef:activity/change/20260821T1554374006150000/300177 concept_associations ef:agent/carry_associations_onto_flows ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v17 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v18
ef:activity/change/20260821T1554374006150000/390154 properties ef:agent/normalise_property_values ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v18 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v19
ef:activity/change/20260821T1554374006150000/397651 types ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v19 ef:flow/08a91e70-3ddc-11dd-9c8f-0050c2490048/v20

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