Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 36931' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=99-35-4; cc_chebi_agreed_name='1,3,5-Trinitrobenzene'; object_uuid=fo-faca84118175d357
cas_match_labels 1 consensus_match group_key=trinitrobenzene||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'99-35-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-faca84118175d357: {'99-35-4': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['99-35-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48113']; candidate_pubchem_cids=[7434, 70284]; selected_pubchem_cids=[7434]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
8,531 bootstrap_labels prefLabel [{"@value":"trinitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Bootstrapped prefLabel from legacy name field
8,532 bootstrap_labels name trinitrobenzene Purged legacy name field to enforce prefLabel usage
8,533 bootstrap_labels synonyms ["1,3,5-TRINITROBENZENE","1,3,5-Trinitrobenzol","2,4,6-trinitrobenzene","246-TRINITROBENZENE","AC1L1OR7","AC1Q5AL7","AK… [] Removed legacy synonyms field in favor of structured labels
38,580 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Ocean"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
38,581 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-ocea Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water
216,179 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
223,106 normalize_name_case prefLabel [{"@value":"trinitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"Trinitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
235,336 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
235,337 enrich_references skos_definition [{"@value":"A trinitrobenzene in which each of the nitro groups is meta- to the other two.","@language":"en","provenanc… Merged ChEBI/PubChem definitions into skos:definition
235,338 enrich_references references [] [{"@id":"gmelin:27979","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['99-35-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_48113']; candidate_pubchem_cids=[7434, 70284]; selected_pubchem_cids=[7434]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,663 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… rdkit_pre_consensus from 'C1=C(C=C(C=C1[N+](=O)[O-])[N+](=O)[O-])[N+](=O)[O-]'; added: monoisotopic_mass
255,576 chebi_altlabels altLabel [] [{"@value":"1,3,5-Trinitrobenzol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
273,019 consensus_match prefLabel [{"@value":"Trinitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"1,3,5-Trinitrobenzene","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttribut… cas=99-35-4; cc_chebi_agreed_name='1,3,5-Trinitrobenzene'; object_uuid=fo-faca84118175d357
273,020 consensus_match altLabel [{"@value":"1,3,5-Trinitrobenzol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… [{"@value":"1,3,5-Trinitrobenzol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… cas=99-35-4; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-faca84118175d357
273,021 consensus_match altLabel [{"@value":"1,3,5-Trinitrobenzol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… [{"@value":"1,3,5-Trinitrobenzol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… group_key=trinitrobenzene||dimension=Environmental > media=Water > water_body=Unknown; cas=99-35-4; added Common Chemistry CAS names as altLabel: 2,4,6-Trinitrobenzene, Benzene, 1,3,5-trinitro-, NSC 36931, TNB (nitro compound); object_uuid=fo-faca84118175d357
273,022 consensus_match cas_match_labels {"99-35-4":"exactMatch"} group_key=trinitrobenzene||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'99-35-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-faca84118175d357: {'99-35-4': 'exactMatch'}
275,826 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '1,3,5-Trinitrobenzene'
282,384 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… rdkit_post_consensus from 'O=[N+]([O-])c1cc([N+](=O)[O-])cc([N+](=O)[O-])c1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,009 strip_catalogue_altlabels altLabel [{"@value":"1,3,5-Trinitrobenzol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… [{"@value":"1,3,5-Trinitrobenzol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttribute… Removed 1 catalogue altLabel value(s): 'NSC 36931' (registry code)
300,308 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… associations resolved on the elementary layer
390,163 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H3N3O6"]… typed the way the ontology types it
397,662 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T1812399309960000/8531 prefLabel ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v0 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v1
ef:activity/change/20260820T1812399309960000/8532 name ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v1 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v2
ef:activity/change/20260820T1812399309960000/8533 synonyms ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v2 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v3
ef:activity/change/20260820T1812399309960000/38580 context ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v3 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v4
ef:activity/change/20260820T1812399309960000/38581 context_iri ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v4 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v5
ef:activity/change/20260820T1812399309960000/216179 unit_iri ef:agent/unit_normalization ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v5 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v6
ef:activity/change/20260820T1812399309960000/223106 prefLabel ef:agent/normalize_name_case ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v6 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v7
ef:activity/change/20260820T1812399309960000/235336 properties ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v7 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v8
ef:activity/change/20260820T1812399309960000/235337 skos_definition ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v8 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v9
ef:activity/change/20260820T1812399309960000/235338 references ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v9 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v10
ef:activity/change/20260820T1812399309960000/250663 properties ef:agent/rdkit_pre_consensus ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v10 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v11
ef:activity/change/20260820T1812399309960000/255576 altLabel ef:agent/chebi_altlabels ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v11 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v12
ef:activity/change/20260820T1812399309960000/273019 prefLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v12 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v13
ef:activity/change/20260820T1812399309960000/273020 altLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v13 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v14
ef:activity/change/20260820T1812399309960000/273021 altLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v14 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v15
ef:activity/change/20260820T1812399309960000/273022 cas_match_labels ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v15 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v16
ef:activity/change/20260820T1812399309960000/275826 properties ef:agent/opsin_iupac ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v16 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v17
ef:activity/change/20260820T1812399309960000/282384 properties ef:agent/rdkit_post_consensus ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v17 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v18
ef:activity/change/20260820T1812399309960000/289009 altLabel ef:agent/strip_catalogue_altlabels ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v18 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v19
ef:activity/change/20260820T1812399309960000/300308 concept_associations ef:agent/carry_associations_onto_flows ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v19 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v20
ef:activity/change/20260820T1812399309960000/390163 properties ef:agent/normalise_property_values ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v20 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v21
ef:activity/change/20260820T1812399309960000/397662 types ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v21 ef:flow/08a91e70-3ddc-11dd-9d19-0050c2490048/v22

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