Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 3 catalogue altLabel value(s): 'B 68138' (grade code), 'BAY 68138' (grade code), 'Bayer 68138' (trade name)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=fenamiphos||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'22224-92-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-bd49c63fe52f49f6: {'22224-92-6': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['22224-92-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38680']; candidate_pubchem_cids=[31070, 122715465]; selected_pubchem_cids=[31070]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
8,884 bootstrap_labels prefLabel [{"@value":"fenamiphos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Bootstrapped prefLabel from legacy name field
8,885 bootstrap_labels name fenamiphos Purged legacy name field to enforce prefLabel usage
8,886 bootstrap_labels synonyms ["1-(Methylethyl)-ethyl 3-methyl-4-(methylthio)phenyl phosphoramidate","AC-12688","AC1L1KV7","AC1Q6SNO","BAY 68138","BA… [] Removed legacy synonyms field in favor of structured labels
40,292 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Surface water"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
40,293 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-suwa Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water
216,301 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
223,194 normalize_name_case prefLabel [{"@value":"fenamiphos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… [{"@value":"Fenamiphos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"con… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
235,687 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
235,688 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
235,689 enrich_references references [] [{"@id":"beilstein:4752893","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['22224-92-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38680']; candidate_pubchem_cids=[31070, 122715465]; selected_pubchem_cids=[31070]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,766 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… rdkit_pre_consensus from 'CCOP(=O)(NC(C)C)OC1=CC(=C(C=C1)SC)C'; added: monoisotopic_mass
255,660 chebi_altlabels altLabel [] [{"@value":"Nemacur","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
267,117 consensus_match altLabel [{"@value":"Nemacur","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… [{"@value":"Nemacur","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… group_key=fenamiphos||dimension=Environmental > media=Water > water_body=Surface water; cas=22224-92-6; added Common Chemistry CAS names as altLabel: B 68138, BAY 68138, Bayer 68138, Ethyl 3-methyl-4-(methylthio)phenyl (1-methylethyl)phosphoramidate, Fenamifos, Fenamithion, Nemacur P, Phosphoramidic acid, (1-methylethyl)-, ethyl 3-methyl-4-(methylthio)phenyl ester, Phosphoramidic acid, <em>N</em>-(1-methylethyl)-, ethyl 3-methyl-4-(methylthio)phenyl ester, Phosphoramidic acid, isopropyl-, ethyl 4-(methylthio)-<em>m</em>-tolyl ester; object_uuid=fo-bd49c63fe52f49f6
267,118 consensus_match cas_match_labels {"22224-92-6":"exactMatch"} group_key=fenamiphos||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'22224-92-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-bd49c63fe52f49f6: {'22224-92-6': 'exactMatch'}
275,955 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'ethyl 3-methyl-4-(methylsulfanyl)phenyl (1-methylethyl)amidophosphate'
282,523 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… rdkit_post_consensus from 'CCOP(=O)(NC(C)C)Oc1ccc(SC)c(C)c1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,131 strip_catalogue_altlabels altLabel [{"@value":"Nemacur","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… [{"@value":"Nemacur","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… Removed 3 catalogue altLabel value(s): 'B 68138' (grade code), 'BAY 68138' (grade code), 'Bayer 68138' (trade name)
301,191 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/08a91e70-3ddc-… associations resolved on the elementary layer
390,305 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H22NO3P… typed the way the ontology types it
397,850 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
397,851 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_22153","rdfs:label":"acaricide","http://www.w3.org/2004/02/skos/core#defi… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/8884 prefLabel ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v0 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v1
ef:activity/change/20260820T0738569779880000/8885 name ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v1 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v2
ef:activity/change/20260820T0738569779880000/8886 synonyms ef:agent/bootstrap_labels ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v2 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v3
ef:activity/change/20260820T0738569779880000/40292 context ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v3 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v4
ef:activity/change/20260820T0738569779880000/40293 context_iri ef:agent/default_context_mapping ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v4 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v5
ef:activity/change/20260820T0738569779880000/216301 unit_iri ef:agent/unit_normalization ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v5 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v6
ef:activity/change/20260820T0738569779880000/223194 prefLabel ef:agent/normalize_name_case ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v6 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v7
ef:activity/change/20260820T0738569779880000/235687 properties ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v7 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v8
ef:activity/change/20260820T0738569779880000/235688 skos_definition ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v8 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v9
ef:activity/change/20260820T0738569779880000/235689 references ef:agent/enrich_references ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v9 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v10
ef:activity/change/20260820T0738569779880000/250766 properties ef:agent/rdkit_pre_consensus ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v10 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v11
ef:activity/change/20260820T0738569779880000/255660 altLabel ef:agent/chebi_altlabels ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v11 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v12
ef:activity/change/20260820T0738569779880000/267117 altLabel ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v12 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v13
ef:activity/change/20260820T0738569779880000/267118 cas_match_labels ef:agent/consensus_match ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v13 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v14
ef:activity/change/20260820T0738569779880000/275955 properties ef:agent/opsin_iupac ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v14 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v15
ef:activity/change/20260820T0738569779880000/282523 properties ef:agent/rdkit_post_consensus ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v15 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v16
ef:activity/change/20260820T0738569779880000/289131 altLabel ef:agent/strip_catalogue_altlabels ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v16 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v17
ef:activity/change/20260820T0738569779880000/301191 concept_associations ef:agent/carry_associations_onto_flows ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v17 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v18
ef:activity/change/20260820T0738569779880000/390305 properties ef:agent/normalise_property_values ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v18 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v19
ef:activity/change/20260820T0738569779880000/397850 types ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v19 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v20
ef:activity/change/20260820T0738569779880000/397851 roles ef:agent/link_flows_to_their_substance ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v20 ef:flow/08a91e70-3ddc-11dd-a076-0050c2490048/v21

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