Pantoprazole
Everything that changed this flow. Back to the flow
0b63d74a-ff77-4975-94c8-3bdf347f88e7
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'BY 1023' (grade code), 'SKF 96022' (grade code) |
| prefLabel | 2 | bootstrap_labels, consensus_match | cas=102625-70-7; cc_chebi_agreed_name='Pantoprazole'; object_uuid=fo-807d4cbc99652022 |
| cas_match_labels | 1 | consensus_match | group_key=2-{[(3,4-dimethoxy-2-pyridinyl)methyl]-sulfinyl}-5-methyl-1h-1,3-benzimidazole;5-difluoromethoxy-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-1h-benzimidazole||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi']; cas_sources={'102625-70-7': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-807d4cbc99652022: {'102625-70-7': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['102625-70-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_7915']; candidate_pubchem_cids=[4679, 11181988, 15163489, 126843177]; selected_pubchem_cids=[4679]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,966 | bootstrap_labels | prefLabel | — | [{"@value":"2-{[(3,4-dimethoxy-2-pyridinyl)methyl]-sulfinyl}-5-methyl-1h-1,3-benzimidazole;5-difluoromethoxy-2-[[(3,4-d… | Bootstrapped prefLabel from legacy name field |
| 4,967 | bootstrap_labels | name | 2-{[(3,4-dimethoxy-2-pyridinyl)methyl]-sulfinyl}-5-methyl-1h-1,3-benzimidazole;5-difluoromethoxy-2-[[(3,4-dimethoxy-2-p… | — | Purged legacy name field to enforce prefLabel usage |
| 4,968 | bootstrap_labels | synonyms | ["organic"] | [] | Removed legacy synonyms field in favor of structured labels |
| 43,212 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Long-term"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 43,213 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-lote | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified (long-term) |
| 214,998 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 231,954 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,955 | enrich_references | skos_definition | — | [{"@value":"A member of the class of benzimidazoles that is 1H-benzimidazole substituted by a difluoromethoxy group at… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,956 | enrich_references | references | [] | [{"@id":"drugcentral:2054","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['102625-70-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_7915']; candidate_pubchem_cids=[4679, 11181988, 15163489, 126843177]; selected_pubchem_cids=[4679]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,689 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | rdkit_pre_consensus from 'COC1=C(C(=NC=C1)CS(=O)C2=NC3=C(N2)C=C(C=C3)OC(F)F)OC'; added: monoisotopic_mass |
| 255,012 | chebi_altlabels | altLabel | [] | [{"@value":"5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sou… | Added 4 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 261,377 | consensus_match | prefLabel | [{"@value":"2-{[(3,4-dimethoxy-2-pyridinyl)methyl]-sulfinyl}-5-methyl-1h-1,3-benzimidazole;5-difluoromethoxy-2-[[(3,4-d… | [{"@value":"Pantoprazole","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"co… | cas=102625-70-7; cc_chebi_agreed_name='Pantoprazole'; object_uuid=fo-807d4cbc99652022 |
| 261,378 | consensus_match | altLabel | [{"@value":"5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sou… | [{"@value":"5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sou… | cas=102625-70-7; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-807d4cbc99652022 |
| 261,379 | consensus_match | altLabel | [{"@value":"5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sou… | [{"@value":"5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sou… | group_key=2-{[(3,4-dimethoxy-2-pyridinyl)methyl]-sulfinyl}-5-methyl-1h-1,3-benzimidazole;5-difluoromethoxy-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-1h-benzimidazole||dimension=Environmental > media=Air > strata=Unknown; cas=102625-70-7; added Common Chemistry CAS names as altLabel: (±)-Pantoprazole, 1<em>H</em>-Benzimidazole, 5-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-, 1<em>H</em>-Benzimidazole, 6-(difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-, 2-[[(3,4-Dimethoxypyridin-2-yl)methyl]sulfinyl]-5-difluoromethoxy-1<em>H</em>-benzimidazole, 5-(Difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-1<em>H</em>-benzimidazole, 5-(Difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridyl)methyl]sulfinyl]-1<em>H</em>-benzimidazole, 6-(Difluoromethoxy)-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-1<em>H</em>-benzimidazole, Altopan, BY 1023, Controloc Control, Pantecta Control, Pantocid, Pantoloc Control, Pantopan, Pantozol, Pantozol Control, Protium, Protium (pharmaceutical), SKF 96022, Somac Control, Toprazole, Zovanta; object_uuid=fo-807d4cbc99652022 |
| 261,380 | consensus_match | cas_match_labels | — | {"102625-70-7":"exactMatch"} | group_key=2-{[(3,4-dimethoxy-2-pyridinyl)methyl]-sulfinyl}-5-methyl-1h-1,3-benzimidazole;5-difluoromethoxy-2-[[(3,4-dimethoxy-2-pyridinyl)methyl]sulfinyl]-1h-benzimidazole||dimension=Environmental > media=Air > strata=Unknown; group_sources=['chebi']; cas_sources={'102625-70-7': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-807d4cbc99652022: {'102625-70-7': 'exactMatch'} |
| 274,824 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole' |
| 281,295 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | rdkit_post_consensus from 'COc1ccnc(CS(=O)c2nc3cc(OC(F)F)ccc3[nH]2)c1OC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,279 | strip_catalogue_altlabels | altLabel | [{"@value":"5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sou… | [{"@value":"5-(difluoromethoxy)-2-{[(3,4-dimethoxypyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole","@language":"en","sou… | Removed 2 catalogue altLabel value(s): 'BY 1023' (grade code), 'SKF 96022' (grade code) |
| 302,632 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/0b63d74a-ff77-… | associations resolved on the elementary layer |
| 389,129 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C16H15F2N3… | typed the way the ontology types it |
| 396,154 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 396,155 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/4966 | prefLabel | ef:agent/bootstrap_labels | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v0 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v1 |
| ef:activity/change/20260821T1554374006150000/4967 | name | ef:agent/bootstrap_labels | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v1 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v2 |
| ef:activity/change/20260821T1554374006150000/4968 | synonyms | ef:agent/bootstrap_labels | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v2 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v3 |
| ef:activity/change/20260821T1554374006150000/43212 | context | ef:agent/default_context_mapping | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v3 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v4 |
| ef:activity/change/20260821T1554374006150000/43213 | context_iri | ef:agent/default_context_mapping | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v4 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v5 |
| ef:activity/change/20260821T1554374006150000/214998 | unit_iri | ef:agent/unit_normalization | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v5 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v6 |
| ef:activity/change/20260821T1554374006150000/231954 | properties | ef:agent/enrich_references | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v6 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v7 |
| ef:activity/change/20260821T1554374006150000/231955 | skos_definition | ef:agent/enrich_references | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v7 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v8 |
| ef:activity/change/20260821T1554374006150000/231956 | references | ef:agent/enrich_references | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v8 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v9 |
| ef:activity/change/20260821T1554374006150000/249689 | properties | ef:agent/rdkit_pre_consensus | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v9 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v10 |
| ef:activity/change/20260821T1554374006150000/255012 | altLabel | ef:agent/chebi_altlabels | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v10 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v11 |
| ef:activity/change/20260821T1554374006150000/261377 | prefLabel | ef:agent/consensus_match | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v11 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v12 |
| ef:activity/change/20260821T1554374006150000/261378 | altLabel | ef:agent/consensus_match | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v12 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v13 |
| ef:activity/change/20260821T1554374006150000/261379 | altLabel | ef:agent/consensus_match | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v13 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v14 |
| ef:activity/change/20260821T1554374006150000/261380 | cas_match_labels | ef:agent/consensus_match | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v14 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v15 |
| ef:activity/change/20260821T1554374006150000/274824 | properties | ef:agent/opsin_iupac | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v15 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v16 |
| ef:activity/change/20260821T1554374006150000/281295 | properties | ef:agent/rdkit_post_consensus | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v16 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v17 |
| ef:activity/change/20260821T1554374006150000/288279 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v17 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v18 |
| ef:activity/change/20260821T1554374006150000/302632 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v18 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v19 |
| ef:activity/change/20260821T1554374006150000/389129 | properties | ef:agent/normalise_property_values | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v19 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v20 |
| ef:activity/change/20260821T1554374006150000/396154 | types | ef:agent/link_flows_to_their_substance | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v20 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v21 |
| ef:activity/change/20260821T1554374006150000/396155 | roles | ef:agent/link_flows_to_their_substance | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v21 | ef:flow/0b63d74a-ff77-4975-94c8-3bdf347f88e7/v22 |