Pyrite
Everything that changed this flow. Back to the flow
0d7a13f0-6556-11dd-ad8b-0800200c9a66
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, normalise_property_values, opsin_iupac, rdkit_authoritative, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=pyrite||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1309-36-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-752f9c95c55100e0: {'1309-36-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable material resources from ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable material resources from ground |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 215-167-7 from CAS 1309-36-0 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['1309-36-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_86471']; candidate_pubchem_cids=[14788, 66348, 6392798]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 11,636 | bootstrap_labels | prefLabel | — | [{"@value":"pyrite","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Bootstrapped prefLabel from legacy name field |
| 11,637 | bootstrap_labels | name | pyrite | — | Purged legacy name field to enforce prefLabel usage |
| 11,638 | bootstrap_labels | synonyms | ["AC1L24JU","AC1Q7EE7","Pyrite (FeS2)","bis(sulfanylidene)iron"] | [] | Removed legacy synonyms field in favor of structured labels |
| 45,064 | default_context_mapping | context | — | {"dimension":"Resource","media":"Ground"} | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable material resources from ground |
| 45,065 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/reso-grou | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable material resources from ground |
| 217,198 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,796 | normalize_name_case | prefLabel | [{"@value":"pyrite","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | [{"@value":"Pyrite","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consens… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 226,940 | ec_cross_check | ec_numbers | [] | ["215-167-7"] | Resolved from EC-inventory: 215-167-7 from CAS 1309-36-0 |
| 238,257 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe.S2"],"a… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=0) |
| 238,258 | enrich_references | skos_definition | — | [{"@value":"An iron sulfide mineral with formula FeS2.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_re… | Merged ChEBI/PubChem definitions into skos:definition |
| 238,259 | enrich_references | references | [] | [{"@id":"https://commonchemistry.cas.org/detail?cas_rn=1309-36-0","provenance":{"prov:wasGeneratedBy":"enrich_reference… | Added references with provenance; cas_numbers=['1309-36-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_86471']; candidate_pubchem_cids=[14788, 66348, 6392798]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,499 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe.S2"],"a… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe.S2","Fe… | rdkit_pre_consensus from '[Fe+2].[S-][S-]'; added: molecular_formula |
| 255,991 | chebi_altlabels | altLabel | [] | [{"@value":"FeS2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 271,237 | consensus_match | altLabel | [{"@value":"FeS2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"FeS2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=pyrite||dimension=Resource > media=Ground; cas=1309-36-0; added Common Chemistry CAS names as altLabel: Iron ores, pyrite, Iron pyrite, Iron pyrite (FeS<sub>2</sub>), Iron pyrites, Pyrite (FeS<sub>2</sub>); object_uuid=fo-752f9c95c55100e0 |
| 271,238 | consensus_match | cas_match_labels | — | {"1309-36-0":"exactMatch"} | group_key=pyrite||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'1309-36-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-752f9c95c55100e0: {'1309-36-0': 'exactMatch'} |
| 276,681 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe.S2","Fe… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe.S2","Fe… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'iron disulfide' |
| 279,757 | rdkit_authoritative | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Fe.S2","Fe… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | rdkit_authoritative: set definitive structural data from unique InChI |
| 283,309 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | rdkit_post_consensus from '[Fe].[S].[S]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,585 | dedupe_altlabels | altLabel | [{"@value":"FeS2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"FeS2","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Deduplicated altLabel values and removed entries matching prefLabel |
| 303,558 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/0d7a13f0-6556-… | associations resolved on the elementary layer |
| 391,036 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | typed the way the ontology types it |
| 398,903 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularComplex"] | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/11636 | prefLabel | ef:agent/bootstrap_labels | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v0 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v1 |
| ef:activity/change/20260821T1554374006150000/11637 | name | ef:agent/bootstrap_labels | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v1 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v2 |
| ef:activity/change/20260821T1554374006150000/11638 | synonyms | ef:agent/bootstrap_labels | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v2 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v3 |
| ef:activity/change/20260821T1554374006150000/45064 | context | ef:agent/default_context_mapping | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v3 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v4 |
| ef:activity/change/20260821T1554374006150000/45065 | context_iri | ef:agent/default_context_mapping | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v4 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v5 |
| ef:activity/change/20260821T1554374006150000/217198 | unit_iri | ef:agent/unit_normalization | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v5 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v6 |
| ef:activity/change/20260821T1554374006150000/223796 | prefLabel | ef:agent/normalize_name_case | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v6 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v7 |
| ef:activity/change/20260821T1554374006150000/226940 | ec_numbers | ef:agent/ec_cross_check | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v7 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v8 |
| ef:activity/change/20260821T1554374006150000/238257 | properties | ef:agent/enrich_references | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v8 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v9 |
| ef:activity/change/20260821T1554374006150000/238258 | skos_definition | ef:agent/enrich_references | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v9 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v10 |
| ef:activity/change/20260821T1554374006150000/238259 | references | ef:agent/enrich_references | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v10 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v11 |
| ef:activity/change/20260821T1554374006150000/251499 | properties | ef:agent/rdkit_pre_consensus | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v11 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v12 |
| ef:activity/change/20260821T1554374006150000/255991 | altLabel | ef:agent/chebi_altlabels | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v12 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v13 |
| ef:activity/change/20260821T1554374006150000/271237 | altLabel | ef:agent/consensus_match | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v13 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v14 |
| ef:activity/change/20260821T1554374006150000/271238 | cas_match_labels | ef:agent/consensus_match | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v14 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v15 |
| ef:activity/change/20260821T1554374006150000/276681 | properties | ef:agent/opsin_iupac | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v15 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v16 |
| ef:activity/change/20260821T1554374006150000/279757 | properties | ef:agent/rdkit_authoritative | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v16 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v17 |
| ef:activity/change/20260821T1554374006150000/283309 | properties | ef:agent/rdkit_post_consensus | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v17 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v18 |
| ef:activity/change/20260821T1554374006150000/292585 | altLabel | ef:agent/dedupe_altlabels | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v18 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v19 |
| ef:activity/change/20260821T1554374006150000/303558 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v19 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v20 |
| ef:activity/change/20260821T1554374006150000/391036 | properties | ef:agent/normalise_property_values | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v20 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v21 |
| ef:activity/change/20260821T1554374006150000/398903 | types | ef:agent/link_flows_to_their_substance | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v21 | ef:flow/0d7a13f0-6556-11dd-ad8b-0800200c9a66/v22 |