L-tryptophan
Everything that changed this flow. Back to the flow
11330733-0006-4242-aa7a-7459740bc38b
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'EH 121' (grade code), 'NSC 13119' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=l-tryptophan||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'73-22-3': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-548b7d04dc2a9444: {'73-22-3': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['73-22-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16828']; candidate_pubchem_cids=[1148, 6305, 9060, 69600, 116676, 119462, 4099458, 6923516]; selected_pubchem_cids=[6305]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 560 | bootstrap_labels | prefLabel | — | [{"@value":"l-tryptophan","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Bootstrapped prefLabel from legacy name field |
| 561 | bootstrap_labels | name | l-tryptophan | — | Purged legacy name field to enforce prefLabel usage |
| 562 | bootstrap_labels | synonyms | ["organic","l-tryptophan"] | [] | Removed legacy synonyms field in favor of structured labels |
| 47,512 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 47,513 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 213,526 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,225 | normalize_name_case | prefLabel | [{"@value":"l-tryptophan","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | [{"@value":"L-tryptophan","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,707 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 227,708 | enrich_references | skos_definition | — | [{"@value":"The L-enantiomer of tryptophan.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_references.ch… | Merged ChEBI/PubChem definitions into skos:definition |
| 227,709 | enrich_references | references | [] | [{"@id":"drugcentral:2780","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['73-22-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_16828']; candidate_pubchem_cids=[1148, 6305, 9060, 69600, 116676, 119462, 4099458, 6923516]; selected_pubchem_cids=[6305]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,466 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | rdkit_pre_consensus from 'C1=CC=C2C(=C1)C(=CN2)CC(C(=O)O)N'; added: inchi2d_string, monoisotopic_mass |
| 254,456 | chebi_altlabels | altLabel | [] | [{"@value":"(2S)-2-amino-3-(1H-indol-3-yl)propanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altla… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,318 | consensus_match | altLabel | [{"@value":"(2S)-2-amino-3-(1H-indol-3-yl)propanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altla… | [{"@value":"(2S)-2-amino-3-(1H-indol-3-yl)propanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altla… | group_key=l-tryptophan||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=73-22-3; added Common Chemistry CAS names as altLabel: (-)-Tryptophan, (2S)-2-Azaniumyl-3-(1<em>H</em>-indol-3-yl)propanoate, (<em>S</em>)-2-Amino-3-(1<em>H</em>-indol-3-yl)propanoic acid, (<em>S</em>)-α-Amino-1<em>H</em>-indole-3-propanoic acid, (<em>S</em>)-α-Amino-β-indolepropionic acid, (<em>S</em>)-α-Aminoindole-3-propionic acid, 1<em>H</em>-Indole-3-alanine, (<em>S</em>)-, 1<em>H</em>-Indole-3-propanoic acid, α-amino-, (<em>S</em>)-, 2-Amino-3-indolylpropanoic acid, 3-Indol-3-ylalanine, <em>l</em>-α-Aminoindole-3-propionic acid, <em>l</em>-β-3-Indolylalanine, <span class="text-smallcaps">L</span>-Alanine, 3-(1<em>H</em>-indol-3-yl)-, <span class="text-smallcaps">L</span>-Tryptophane, EH 121, Lyphan, MeSH ID: D014364, NSC 13119, Tryptophan, <span class="text-smallcaps">L</span>-, Tryptophane; object_uuid=fo-548b7d04dc2a9444 |
| 268,319 | consensus_match | cas_match_labels | — | {"73-22-3":"exactMatch"} | group_key=l-tryptophan||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory']; cas_sources={'73-22-3': ['chebi', 'ec_inventory']}; assigned CAS labels from group consensus; object_uuid=fo-548b7d04dc2a9444: {'73-22-3': 'exactMatch'} |
| 273,610 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'L-tryptophan' |
| 279,971 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | rdkit_post_consensus from 'N[C@@H](Cc1c[nH]c2ccccc12)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,378 | strip_catalogue_altlabels | altLabel | [{"@value":"(2S)-2-amino-3-(1H-indol-3-yl)propanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altla… | [{"@value":"(2S)-2-amino-3-(1H-indol-3-yl)propanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altla… | Removed 2 catalogue altLabel value(s): 'EH 121' (grade code), 'NSC 13119' (registry code) |
| 304,804 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/11330733-0006-… | associations resolved on the elementary layer |
| 387,886 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | typed the way the ontology types it |
| 394,409 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 394,410 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H12N2O2… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/560 | prefLabel | ef:agent/bootstrap_labels | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v0 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v1 |
| ef:activity/change/20260820T0738569779880000/561 | name | ef:agent/bootstrap_labels | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v1 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v2 |
| ef:activity/change/20260820T0738569779880000/562 | synonyms | ef:agent/bootstrap_labels | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v2 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v3 |
| ef:activity/change/20260820T0738569779880000/47512 | context | ef:agent/default_context_mapping | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v3 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v4 |
| ef:activity/change/20260820T0738569779880000/47513 | context_iri | ef:agent/default_context_mapping | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v4 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v5 |
| ef:activity/change/20260820T0738569779880000/213526 | unit_iri | ef:agent/unit_normalization | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v5 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v6 |
| ef:activity/change/20260820T0738569779880000/221225 | prefLabel | ef:agent/normalize_name_case | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v6 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v7 |
| ef:activity/change/20260820T0738569779880000/227707 | properties | ef:agent/enrich_references | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v7 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v8 |
| ef:activity/change/20260820T0738569779880000/227708 | skos_definition | ef:agent/enrich_references | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v8 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v9 |
| ef:activity/change/20260820T0738569779880000/227709 | references | ef:agent/enrich_references | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v9 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v10 |
| ef:activity/change/20260820T0738569779880000/248466 | properties | ef:agent/rdkit_pre_consensus | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v10 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v11 |
| ef:activity/change/20260820T0738569779880000/254456 | altLabel | ef:agent/chebi_altlabels | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v11 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v12 |
| ef:activity/change/20260820T0738569779880000/268318 | altLabel | ef:agent/consensus_match | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v12 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v13 |
| ef:activity/change/20260820T0738569779880000/268319 | cas_match_labels | ef:agent/consensus_match | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v13 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v14 |
| ef:activity/change/20260820T0738569779880000/273610 | properties | ef:agent/opsin_iupac | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v14 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v15 |
| ef:activity/change/20260820T0738569779880000/279971 | properties | ef:agent/rdkit_post_consensus | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v15 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v16 |
| ef:activity/change/20260820T0738569779880000/287378 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v16 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v17 |
| ef:activity/change/20260820T0738569779880000/304804 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v17 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v18 |
| ef:activity/change/20260820T0738569779880000/387886 | properties | ef:agent/normalise_property_values | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v18 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v19 |
| ef:activity/change/20260820T0738569779880000/394409 | types | ef:agent/link_flows_to_their_substance | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v19 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v20 |
| ef:activity/change/20260820T0738569779880000/394410 | properties | ef:agent/link_flows_to_their_substance | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v20 | ef:flow/11330733-0006-4242-aa7a-7459740bc38b/v21 |