Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 4 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, dedupe_altlabels Deduplicated altLabel values and removed entries matching prefLabel
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=enrofloxacin||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'93106-60-6': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-534982178d22b2c9: {'93106-60-6': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['93106-60-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_35720']; candidate_pubchem_cids=[71188, 6957639, 11482779, 45357113]; selected_pubchem_cids=[71188]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

19
# Step Field From To Why
14,787 bootstrap_labels prefLabel [{"@value":"enrofloxacin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Bootstrapped prefLabel from legacy name field
14,788 bootstrap_labels name enrofloxacin Purged legacy name field to enforce prefLabel usage
14,789 bootstrap_labels synonyms ["3-quinolinecarboxylicacid,1-cyclopropyl-7-(4-ethyl-1-piperazinyl)-6-fluoro-1,4-dihydro-4-oxo-othernamesenrofloxacin",… [] Removed legacy synonyms field in favor of structured labels
49,942 default_context_mapping context {"dimension":"Environmental","media":"Air","indoor":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
49,943 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-indr-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, indoor
218,215 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,504 normalize_name_case prefLabel [{"@value":"enrofloxacin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… [{"@value":"Enrofloxacin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
241,170 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H22FN3O… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
241,171 enrich_references skos_definition [{"@value":"A quinolinemonocarboxylic acid that is 1,4-dihydroquinoline-3-carboxylic acid substituted by an oxo group a… Merged ChEBI/PubChem definitions into skos:definition
241,172 enrich_references references [] [{"@id":"drugcentral:1017","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… Added references with provenance; cas_numbers=['93106-60-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_35720']; candidate_pubchem_cids=[71188, 6957639, 11482779, 45357113]; selected_pubchem_cids=[71188]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
256,354 chebi_altlabels altLabel [] [{"@value":"1-cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid","@language":… Added 2 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
266,695 consensus_match altLabel [{"@value":"1-cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid","@language":… [{"@value":"1-cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid","@language":… group_key=enrofloxacin||dimension=Environmental > media=Air > indoor=Unknown; cas=93106-60-6; added Common Chemistry CAS names as altLabel: 1-Cyclopropyl-6-fluoro-7-(4-ethyl-1-piperazinyl)-1,4-dihydro-4-oxo-3-quinolinecarboxylic acid, 1-Cyclopropyl-7-(4-ethyl-1-piperazinyl)-6-fluoro-1,4-dihydro-4-oxo-3-quinolinecarboxylic acid, 1-Cyclopropyl-7-(4-ethyl-piperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydro-quinoline-3-carboxylic acid, 1-Cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxoquinoline-3-carboxylic acid, 3-Quinolinecarboxylic acid, 1-cyclopropyl-7-(4-ethyl-1-piperazinyl)-6-fluoro-1,4-dihydro-4-oxo-, <em>N</em>-Ethylciprofloxacin, <em>N</em>′-Ethylciprofloxacin, Alsir, BAY-Vp 2674, Bayrocin, Biofloxavet, CFPQ, Enflocyna Sol, Enrocin, Enrodac, Enrofan, Enroflon, Enrogil, Enrovet, Enroxil, Fortius, N-Ethyl ciprofloxacin, PD 160788; object_uuid=fo-534982178d22b2c9
266,696 consensus_match cas_match_labels {"93106-60-6":"exactMatch"} group_key=enrofloxacin||dimension=Environmental > media=Air > indoor=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'93106-60-6': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-534982178d22b2c9: {'93106-60-6': 'exactMatch'}
277,538 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H22FN3O… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H22FN3O… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '1-cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid'
284,233 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H22FN3O… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H22FN3O… rdkit_post_consensus from 'CCN1CCN(c2cc3c(cc2F)c(=O)c(C(=O)O)cn3C2CC2)CC1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
292,780 dedupe_altlabels altLabel [{"@value":"1-cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid","@language":… [{"@value":"1-cyclopropyl-7-(4-ethylpiperazin-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic acid","@language":… Deduplicated altLabel values and removed entries matching prefLabel
305,998 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/154b9f99-94af-… associations resolved on the elementary layer
391,897 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H22FN3O… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C19H22FN3O… typed the way the ontology types it
400,131 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

19 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/14787 prefLabel ef:agent/bootstrap_labels ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v0 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v1
ef:activity/change/20260822T0600486828500000/14788 name ef:agent/bootstrap_labels ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v1 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v2
ef:activity/change/20260822T0600486828500000/14789 synonyms ef:agent/bootstrap_labels ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v2 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v3
ef:activity/change/20260822T0600486828500000/49942 context ef:agent/default_context_mapping ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v3 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v4
ef:activity/change/20260822T0600486828500000/49943 context_iri ef:agent/default_context_mapping ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v4 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v5
ef:activity/change/20260822T0600486828500000/218215 unit_iri ef:agent/unit_normalization ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v5 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v6
ef:activity/change/20260822T0600486828500000/224504 prefLabel ef:agent/normalize_name_case ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v6 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v7
ef:activity/change/20260822T0600486828500000/241170 properties ef:agent/enrich_references ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v7 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v8
ef:activity/change/20260822T0600486828500000/241171 skos_definition ef:agent/enrich_references ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v8 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v9
ef:activity/change/20260822T0600486828500000/241172 references ef:agent/enrich_references ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v9 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v10
ef:activity/change/20260822T0600486828500000/256354 altLabel ef:agent/chebi_altlabels ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v10 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v11
ef:activity/change/20260822T0600486828500000/266695 altLabel ef:agent/consensus_match ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v11 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v12
ef:activity/change/20260822T0600486828500000/266696 cas_match_labels ef:agent/consensus_match ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v12 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v13
ef:activity/change/20260822T0600486828500000/277538 properties ef:agent/opsin_iupac ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v13 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v14
ef:activity/change/20260822T0600486828500000/284233 properties ef:agent/rdkit_post_consensus ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v14 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v15
ef:activity/change/20260822T0600486828500000/292780 altLabel ef:agent/dedupe_altlabels ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v15 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v16
ef:activity/change/20260822T0600486828500000/305998 concept_associations ef:agent/carry_associations_onto_flows ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v16 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v17
ef:activity/change/20260822T0600486828500000/391897 properties ef:agent/normalise_property_values ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v17 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v18
ef:activity/change/20260822T0600486828500000/400131 types ef:agent/link_flows_to_their_substance ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v18 ef:flow/154b9f99-94af-4cf7-8b8c-3e99d677f321/v19

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