Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 7 enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_authoritative, rdkit_post_consensus, rdkit_pre_consensus the substance's answer, copied onto its flow
prefLabel 3 bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case element name from the flow object: Samarium
altLabel 2 chebi_altlabels, consensus_match group_key=samarium||dimension=Resource > media=Ground; cas=7440-19-9; added Common Chemistry CAS names as altLabel: MeSH ID: D012493; object_uuid=fo-5bfc7a73a8d46ab8
cas_match_labels 1 consensus_match group_key=samarium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-19-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5bfc7a73a8d46ab8: {'7440-19-9': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 231-128-7 from CAS 7440-19-9
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['7440-19-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_33374']; candidate_pubchem_cids=[23951]; selected_pubchem_cids=[23951]; formula_similarity_expected=['Sm']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
15,400 bootstrap_labels prefLabel [{"@value":"samarium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Bootstrapped prefLabel from legacy name field
15,401 bootstrap_labels name samarium Purged legacy name field to enforce prefLabel usage
15,402 bootstrap_labels synonyms ["(151sm)samarium","(153sm)samarium","62Sm","AC1L2N3V","IN3070","KST-1A1798","KST-1A1826","samario"] [] Removed legacy synonyms field in favor of structured labels
51,286 default_context_mapping context {"dimension":"Resource","media":"Ground"} Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
51,287 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/reso-grou Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground
218,412 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,640 normalize_name_case prefLabel [{"@value":"samarium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… [{"@value":"Samarium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
226,991 ec_cross_check ec_numbers [] ["231-128-7"] Resolved from EC-inventory: 231-128-7 from CAS 7440-19-9
241,718 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sm"],"atte… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
241,719 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
241,720 enrich_references references [] [{"@id":"gmelin:16301","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… Added references with provenance; cas_numbers=['7440-19-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_33374']; candidate_pubchem_cids=[23951]; selected_pubchem_cids=[23951]; formula_similarity_expected=['Sm']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,512 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sm"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sm"],"atte… rdkit_pre_consensus from '[Sm]'; added: monoisotopic_mass
256,434 chebi_altlabels altLabel [] [{"@value":"62Sm","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
271,587 consensus_match altLabel [{"@value":"62Sm","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… [{"@value":"62Sm","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… group_key=samarium||dimension=Resource > media=Ground; cas=7440-19-9; added Common Chemistry CAS names as altLabel: MeSH ID: D012493; object_uuid=fo-5bfc7a73a8d46ab8
271,588 consensus_match cas_match_labels {"7440-19-9":"exactMatch"} group_key=samarium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-19-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5bfc7a73a8d46ab8: {'7440-19-9': 'exactMatch'}
277,727 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sm"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sm"],"atte… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Samarium'
279,780 rdkit_authoritative properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Sm"],"atte… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… rdkit_authoritative: set definitive structural data from unique InChI
284,425 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… rdkit_post_consensus from '[Sm]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
306,690 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/172a3da9-6556-… associations resolved on the elementary layer
392,082 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… typed the way the ontology types it
400,380 link_flows_to_their_substance types ["https://w3id.org/chemrof/ChemicalElement"] the substance's answer, copied onto its flow
400,381 link_flows_to_their_substance properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… the substance's answer, copied onto its flow
403,835 flow_layers.pubchem_element_enrichment prefLabel [{"@value":"Samarium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… [{"@value":"Samarium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrich… element name from the flow object: Samarium

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/15400 prefLabel ef:agent/bootstrap_labels ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v0 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v1
ef:activity/change/20260820T0738569779880000/15401 name ef:agent/bootstrap_labels ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v1 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v2
ef:activity/change/20260820T0738569779880000/15402 synonyms ef:agent/bootstrap_labels ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v2 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v3
ef:activity/change/20260820T0738569779880000/51286 context ef:agent/default_context_mapping ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v3 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v4
ef:activity/change/20260820T0738569779880000/51287 context_iri ef:agent/default_context_mapping ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v4 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v5
ef:activity/change/20260820T0738569779880000/218412 unit_iri ef:agent/unit_normalization ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v5 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v6
ef:activity/change/20260820T0738569779880000/224640 prefLabel ef:agent/normalize_name_case ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v6 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v7
ef:activity/change/20260820T0738569779880000/226991 ec_numbers ef:agent/ec_cross_check ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v7 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v8
ef:activity/change/20260820T0738569779880000/241718 properties ef:agent/enrich_references ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v8 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v9
ef:activity/change/20260820T0738569779880000/241719 skos_definition ef:agent/enrich_references ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v9 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v10
ef:activity/change/20260820T0738569779880000/241720 references ef:agent/enrich_references ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v10 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v11
ef:activity/change/20260820T0738569779880000/252512 properties ef:agent/rdkit_pre_consensus ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v11 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v12
ef:activity/change/20260820T0738569779880000/256434 altLabel ef:agent/chebi_altlabels ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v12 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v13
ef:activity/change/20260820T0738569779880000/271587 altLabel ef:agent/consensus_match ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v13 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v14
ef:activity/change/20260820T0738569779880000/271588 cas_match_labels ef:agent/consensus_match ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v14 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v15
ef:activity/change/20260820T0738569779880000/277727 properties ef:agent/opsin_iupac ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v15 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v16
ef:activity/change/20260820T0738569779880000/279780 properties ef:agent/rdkit_authoritative ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v16 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v17
ef:activity/change/20260820T0738569779880000/284425 properties ef:agent/rdkit_post_consensus ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v17 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v18
ef:activity/change/20260820T0738569779880000/306690 concept_associations ef:agent/carry_associations_onto_flows ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v18 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v19
ef:activity/change/20260820T0738569779880000/392082 properties ef:agent/normalise_property_values ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v19 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v20
ef:activity/change/20260820T0738569779880000/400380 types ef:agent/link_flows_to_their_substance ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v20 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v21
ef:activity/change/20260820T0738569779880000/400381 properties ef:agent/link_flows_to_their_substance ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v21 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v22
ef:activity/change/20260820T0738569779880000/403835 prefLabel ef:agent/flow_layers.pubchem_element_enrichment ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v22 ef:flow/172a3da9-6556-11dd-ad8b-0800200c9a66/v23

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