Tridecane
Everything that changed this flow. Back to the flow
172a64cb-6556-11dd-ad8b-0800200c9a66
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 3 catalogue altLabel value(s): 'N 13' (grade code), 'N 13 (paraffin)' (grade code), 'NSC 66205' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=tridecane||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'629-50-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-635e8f9a9950ff69: {'629-50-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['629-50-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_35998']; candidate_pubchem_cids=[12388]; selected_pubchem_cids=[12388]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 15,431 | bootstrap_labels | prefLabel | — | [{"@value":"tridecane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 15,432 | bootstrap_labels | name | tridecane | — | Purged legacy name field to enforce prefLabel usage |
| 15,433 | bootstrap_labels | synonyms | ["AC1L1ZHL","AC1Q28TY","CPD-7949","FT-0082500","LTBB002872","N-TRIDECANE","S0285","T0411","TRD","TRIDECANE, N-","Tridek… | [] | Removed legacy synonyms field in favor of structured labels |
| 51,428 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 51,429 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 218,417 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 224,641 | normalize_name_case | prefLabel | [{"@value":"tridecane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Tridecane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 241,740 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 241,741 | enrich_references | skos_definition | — | [{"@value":"A straight chain alkane containing 13 carbon atoms. It forms a component of the essential oils isolated fro… | Merged ChEBI/PubChem definitions into skos:definition |
| 241,742 | enrich_references | references | [] | [{"@id":"beilstein:1733089","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['629-50-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_35998']; candidate_pubchem_cids=[12388]; selected_pubchem_cids=[12388]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 252,513 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | rdkit_pre_consensus from 'CCCCCCCCCCCCC'; added: monoisotopic_mass |
| 256,430 | chebi_altlabels | altLabel | [] | [{"@value":"CH3-[CH2]11-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,882 | consensus_match | altLabel | [{"@value":"CH3-[CH2]11-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"CH3-[CH2]11-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | group_key=tridecane||dimension=Environmental > media=Ground > geography=Agricultural; cas=629-50-5; added Common Chemistry CAS names as altLabel: Cactus Normal Paraffin N 13, Cetiol iSAN, N 13, N 13 (paraffin), NSC 66205, Paraffin N 13; object_uuid=fo-635e8f9a9950ff69 |
| 272,883 | consensus_match | cas_match_labels | — | {"629-50-5":"exactMatch"} | group_key=tridecane||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'629-50-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-635e8f9a9950ff69: {'629-50-5': 'exactMatch'} |
| 277,712 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Tridecane' |
| 284,408 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | rdkit_post_consensus from 'CCCCCCCCCCCCC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,395 | strip_catalogue_altlabels | altLabel | [{"@value":"CH3-[CH2]11-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"CH3-[CH2]11-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Removed 3 catalogue altLabel value(s): 'N 13' (grade code), 'N 13 (paraffin)' (grade code), 'NSC 66205' (registry code) |
| 306,734 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/172a64cb-6556-… | associations resolved on the elementary layer |
| 392,060 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H28"],"… | typed the way the ontology types it |
| 400,357 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T0609040591070000/15431 | prefLabel | ef:agent/bootstrap_labels | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v0 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v1 |
| ef:activity/change/20260821T0609040591070000/15432 | name | ef:agent/bootstrap_labels | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v1 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v2 |
| ef:activity/change/20260821T0609040591070000/15433 | synonyms | ef:agent/bootstrap_labels | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v2 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v3 |
| ef:activity/change/20260821T0609040591070000/51428 | context | ef:agent/default_context_mapping | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v3 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v4 |
| ef:activity/change/20260821T0609040591070000/51429 | context_iri | ef:agent/default_context_mapping | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v4 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v5 |
| ef:activity/change/20260821T0609040591070000/218417 | unit_iri | ef:agent/unit_normalization | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v5 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v6 |
| ef:activity/change/20260821T0609040591070000/224641 | prefLabel | ef:agent/normalize_name_case | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v6 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v7 |
| ef:activity/change/20260821T0609040591070000/241740 | properties | ef:agent/enrich_references | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v7 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v8 |
| ef:activity/change/20260821T0609040591070000/241741 | skos_definition | ef:agent/enrich_references | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v8 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v9 |
| ef:activity/change/20260821T0609040591070000/241742 | references | ef:agent/enrich_references | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v9 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v10 |
| ef:activity/change/20260821T0609040591070000/252513 | properties | ef:agent/rdkit_pre_consensus | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v10 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v11 |
| ef:activity/change/20260821T0609040591070000/256430 | altLabel | ef:agent/chebi_altlabels | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v11 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v12 |
| ef:activity/change/20260821T0609040591070000/272882 | altLabel | ef:agent/consensus_match | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v12 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v13 |
| ef:activity/change/20260821T0609040591070000/272883 | cas_match_labels | ef:agent/consensus_match | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v13 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v14 |
| ef:activity/change/20260821T0609040591070000/277712 | properties | ef:agent/opsin_iupac | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v14 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v15 |
| ef:activity/change/20260821T0609040591070000/284408 | properties | ef:agent/rdkit_post_consensus | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v15 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v16 |
| ef:activity/change/20260821T0609040591070000/290395 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v16 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v17 |
| ef:activity/change/20260821T0609040591070000/306734 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v17 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v18 |
| ef:activity/change/20260821T0609040591070000/392060 | properties | ef:agent/normalise_property_values | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v18 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v19 |
| ef:activity/change/20260821T0609040591070000/400357 | types | ef:agent/link_flows_to_their_substance | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v19 | ef:flow/172a64cb-6556-11dd-ad8b-0800200c9a66/v20 |