Erythromycin
Everything that changed this flow. Back to the flow
1a0fa325-c6c1-4356-bdf2-da4aac122d54
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 55929' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=erythromycin||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'114-07-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-39c6c7dede6a8304: {'114-07-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['114-07-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_42355']; candidate_pubchem_cids=[3255, 12560, 6713919, 12358519, 16212992, 49867933, 53384888, 66577477, 71306958, 71316415, 132274086, 134693174, 137705094, 140886742, 165844830, 172909622]; selected_pubchem_cids=[12560]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,454 | bootstrap_labels | prefLabel | — | [{"@value":"erythromycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Bootstrapped prefLabel from legacy name field |
| 12,455 | bootstrap_labels | name | erythromycin | — | Purged legacy name field to enforce prefLabel usage |
| 12,456 | bootstrap_labels | synonyms | ["(3R*,4S*,5S*,6R*,7R*,9R*,11R*,12R*,13S*,14R*)-4-((2,6-Dideoxy-3-C-methyl-3-O-methyl-alpha-L-ribo-hexopyranosyl)oxy)-1… | [] | Removed legacy synonyms field in favor of structured labels |
| 53,758 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 53,759 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 217,460 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,978 | normalize_name_case | prefLabel | [{"@value":"erythromycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | [{"@value":"Erythromycin","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 239,011 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 239,012 | enrich_references | skos_definition | — | [{"@value":"An erythromycin that consists of erythronolide A having 2,6-dideoxy-3-C-methyl-3-O-methyl-α-L-ribo-hexopyra… | Merged ChEBI/PubChem definitions into skos:definition |
| 239,013 | enrich_references | references | [] | [{"@id":"beilstein:75000","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"c… | Added references with provenance; cas_numbers=['114-07-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_42355']; candidate_pubchem_cids=[3255, 12560, 6713919, 12358519, 16212992, 49867933, 53384888, 66577477, 71306958, 71316415, 132274086, 134693174, 137705094, 140886742, 165844830, 172909622]; selected_pubchem_cids=[12560]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,718 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | rdkit_pre_consensus from 'CCC1C(C(C(C(=O)C(CC(C(C(C(C(C(=O)O1)C)OC2CC(C(C(O2)C)O)(C)OC)C)OC3C(C(CC(O3)C)N(C)C)O)(C)O)C)C)O)(C)O'; added: inchi2d_string, monoisotopic_mass |
| 256,093 | chebi_altlabels | altLabel | [] | [{"@value":"(3R,4S,5S,6R,7R,9R,11R,12R,13S,14R)-4-(2,6-dideoxy-3-C-methyl-3-O-methyl-alpha-L-ribo-hexopyranosyloxy)-14-… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 266,705 | consensus_match | altLabel | [{"@value":"(3R,4S,5S,6R,7R,9R,11R,12R,13S,14R)-4-(2,6-dideoxy-3-C-methyl-3-O-methyl-alpha-L-ribo-hexopyranosyloxy)-14-… | [{"@value":"(3R,4S,5S,6R,7R,9R,11R,12R,13S,14R)-4-(2,6-dideoxy-3-C-methyl-3-O-methyl-alpha-L-ribo-hexopyranosyloxy)-14-… | group_key=erythromycin||dimension=Environmental > media=Water > water_body=Surface water; cas=114-07-8; added Common Chemistry CAS names as altLabel: Abboticin, Ak-Mycin, Aknin, Dotycin, E-Base, E-Mycin, EMU, ERYC, Emgel, Eritrex, Eritromed, Ermycin, EryDerm, Erycen, Erycette, Erycin, Erycinum, Erygel, Erymax, Erytab, Erythro, Erythrocin, Erythrogran, Erythromast 36, Erythromid, Ilotycin, Inderm, MeSH ID: D004917, NSC 55929, Oxacyclotetradecane, erythromycin deriv., Oxacyclotetradecane-2,10-dione, 4-[(2,6-dideoxy-3-<em>C</em>-methyl-3-<em>O</em>-methyl-α-<span class="text-smallcaps">L</smallcap>-<em>ribo</em>-hexopyranosyl)oxy]-14-ethyl-7,12,13-trihydroxy-3,5,7,9,11,13-hexamethyl-6-[[3,4,6-trideoxy-3-(dimethylamino)-β-<smallcap>D</span>-<em>xylo</em>-hexopyranosyl]oxy]-, [3<em>R</em>-(3<em>R</em>*,4<em>S</em>*,5<em>S</em>*,6<em>R</em>*,7<em>R</em>*,9<em>R</em>*,11<em>R</em>*,12<em>R</em>*,13<em>S</em>*,14<em>R</em>*)]-, PCE, Pantomicina, Retcin, Staticin, Stiemycin, T-Stat, Theramycin Z, Torlamicina, Vetwic, [3<em>R</em>-(3<em>R</em>*,4<em>S</em>*,5<em>S</em>*,6<em>R</em>*,7<em>R</em>*,9<em>R</em>*,11<em>R</em>*,12<em>R</em>*,13<em>S</em>*,14<em>R</em>*)]-4-[(2,6-Dideoxy-3-<em>C</em>-methyl-3-<em>O</em>-methyl-α-<span class="text-smallcaps">L</smallcap>-<em>ribo</em>-hexopyranosyl)oxy]-14-ethyl-7,12,13-trihydroxy-3,5,7,9,11,13-hexamethyl-6-[[3,4,6-trideoxy-3-(dimethylamino)-β-<smallcap>D</span>-<em>xylo</em>-hexopyranosyl]oxy]oxacyclotetradecane-2,10-dione; object_uuid=fo-39c6c7dede6a8304 |
| 266,706 | consensus_match | cas_match_labels | — | {"114-07-8":"exactMatch"} | group_key=erythromycin||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'114-07-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-39c6c7dede6a8304: {'114-07-8': 'exactMatch'} |
| 276,904 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '(3R,4S,5S,6R,7R,9R,11R,12R,13S,14R)-4-(2,6-dideoxy-3-C-methyl-3-O-methyl-alpha-L-ribo-hexopyranosyloxy)-14-ethyl-7,12,13-trihydroxy-6-[3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranosyloxy]-3,5,7,9,11,13-hexamethyloxacyclotetradecane-2,10-dione' |
| 283,551 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | rdkit_post_consensus from 'CC[C@H]1OC(=O)[C@H](C)[C@@H](O[C@H]2C[C@@](C)(OC)[C@@H](O)[C@H](C)O2)[C@H](C)[C@@H](O[C@@H]2O[C@H](C)C[C@H](N(C)C)[C@H]2O)[C@](C)(O)C[C@@H](C)C(=O)[C@H](C)[C@@H](O)[C@]1(C)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,823 | strip_catalogue_altlabels | altLabel | [{"@value":"(3R,4S,5S,6R,7R,9R,11R,12R,13S,14R)-4-(2,6-dideoxy-3-C-methyl-3-O-methyl-alpha-L-ribo-hexopyranosyloxy)-14-… | [{"@value":"(3R,4S,5S,6R,7R,9R,11R,12R,13S,14R)-4-(2,6-dideoxy-3-C-methyl-3-O-methyl-alpha-L-ribo-hexopyranosyloxy)-14-… | Removed 1 catalogue altLabel value(s): 'NSC 55929' (registry code) |
| 307,906 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/1a0fa325-c6c1-… | associations resolved on the elementary layer |
| 391,261 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | typed the way the ontology types it |
| 399,214 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 399,215 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_78298","rdfs:label":"environmental contaminant","http://www.w3.org/2004/0… | the substance's answer, copied onto its flow |
| 399,216 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C37H67NO13… | the substance's answer, copied onto its flow |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/12454 | prefLabel | ef:agent/bootstrap_labels | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v0 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v1 |
| ef:activity/change/20260822T0600486828500000/12455 | name | ef:agent/bootstrap_labels | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v1 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v2 |
| ef:activity/change/20260822T0600486828500000/12456 | synonyms | ef:agent/bootstrap_labels | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v2 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v3 |
| ef:activity/change/20260822T0600486828500000/53758 | context | ef:agent/default_context_mapping | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v3 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v4 |
| ef:activity/change/20260822T0600486828500000/53759 | context_iri | ef:agent/default_context_mapping | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v4 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v5 |
| ef:activity/change/20260822T0600486828500000/217460 | unit_iri | ef:agent/unit_normalization | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v5 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v6 |
| ef:activity/change/20260822T0600486828500000/223978 | prefLabel | ef:agent/normalize_name_case | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v6 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v7 |
| ef:activity/change/20260822T0600486828500000/239011 | properties | ef:agent/enrich_references | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v7 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v8 |
| ef:activity/change/20260822T0600486828500000/239012 | skos_definition | ef:agent/enrich_references | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v8 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v9 |
| ef:activity/change/20260822T0600486828500000/239013 | references | ef:agent/enrich_references | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v9 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v10 |
| ef:activity/change/20260822T0600486828500000/251718 | properties | ef:agent/rdkit_pre_consensus | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v10 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v11 |
| ef:activity/change/20260822T0600486828500000/256093 | altLabel | ef:agent/chebi_altlabels | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v11 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v12 |
| ef:activity/change/20260822T0600486828500000/266705 | altLabel | ef:agent/consensus_match | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v12 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v13 |
| ef:activity/change/20260822T0600486828500000/266706 | cas_match_labels | ef:agent/consensus_match | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v13 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v14 |
| ef:activity/change/20260822T0600486828500000/276904 | properties | ef:agent/opsin_iupac | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v14 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v15 |
| ef:activity/change/20260822T0600486828500000/283551 | properties | ef:agent/rdkit_post_consensus | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v15 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v16 |
| ef:activity/change/20260822T0600486828500000/289823 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v16 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v17 |
| ef:activity/change/20260822T0600486828500000/307906 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v17 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v18 |
| ef:activity/change/20260822T0600486828500000/391261 | properties | ef:agent/normalise_property_values | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v18 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v19 |
| ef:activity/change/20260822T0600486828500000/399214 | types | ef:agent/link_flows_to_their_substance | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v19 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v20 |
| ef:activity/change/20260822T0600486828500000/399215 | roles | ef:agent/link_flows_to_their_substance | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v20 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v21 |
| ef:activity/change/20260822T0600486828500000/399216 | properties | ef:agent/link_flows_to_their_substance | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v21 | ef:flow/1a0fa325-c6c1-4356-bdf2-da4aac122d54/v22 |