Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 19998' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=115-09-3; cc_chebi_agreed_name='Methylmercury chloride'; object_uuid=fo-874b41813899255a
cas_match_labels 1 consensus_match group_key=chloromethylmercury||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'115-09-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-874b41813899255a: {'115-09-3': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
ec_numbers 1 ec_cross_check Resolved from EC-inventory: 204-064-2 from CAS 115-09-3
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['115-09-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28216']; candidate_pubchem_cids=[8253, 409301, 101590331]; selected_pubchem_cids=[409301]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

23
# Step Field From To Why
4,883 bootstrap_labels prefLabel [{"@value":"chloromethylmercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… Bootstrapped prefLabel from legacy name field
4,884 bootstrap_labels name chloromethylmercury Purged legacy name field to enforce prefLabel usage
4,885 bootstrap_labels synonyms ["AC1L8WL9","CH3HgCl","CPD-8865","Caspan","Caspan (VAN)","Chloromethyl mercury","LTBB004307","METHYLMERCURY CHLORIDE","… [] Removed legacy synonyms field in favor of structured labels
54,464 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Unknown"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
54,465 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-unkn Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified
214,970 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,220 normalize_name_case prefLabel [{"@value":"chloromethylmercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… [{"@value":"Chloromethylmercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
226,769 ec_cross_check ec_numbers [] ["204-064-2"] Resolved from EC-inventory: 204-064-2 from CAS 115-09-3
231,870 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
231,871 enrich_references skos_definition [] Merged ChEBI/PubChem definitions into skos:definition
231,872 enrich_references references [] [{"@id":"beilstein:3600218","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['115-09-3']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28216']; candidate_pubchem_cids=[8253, 409301, 101590331]; selected_pubchem_cids=[409301]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,663 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… rdkit_pre_consensus from 'C[Hg]Cl'; added: monoisotopic_mass
254,997 chebi_altlabels altLabel [] [{"@value":"CH3HgCl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
265,087 consensus_match prefLabel [{"@value":"Chloromethylmercury","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttribute… [{"@value":"Methylmercury chloride","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttribu… cas=115-09-3; cc_chebi_agreed_name='Methylmercury chloride'; object_uuid=fo-874b41813899255a
265,088 consensus_match altLabel [{"@value":"CH3HgCl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… [{"@value":"CH3HgCl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… cas=115-09-3; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-874b41813899255a
265,089 consensus_match altLabel [{"@value":"CH3HgCl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… [{"@value":"CH3HgCl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… group_key=chloromethylmercury||dimension=Environmental > media=Water > water_body=Surface water; cas=115-09-3; added Common Chemistry CAS names as altLabel: Caspan, Mercury, chloromethyl-, Methylmercury monochloride, Monomethyl mercury chloride, NSC 19998; object_uuid=fo-874b41813899255a
265,090 consensus_match cas_match_labels {"115-09-3":"exactMatch"} group_key=chloromethylmercury||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'115-09-3': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-874b41813899255a: {'115-09-3': 'exactMatch'}
274,797 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Methylmercury chloride'
281,267 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… rdkit_post_consensus from '[CH3][Hg][Cl]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
288,261 strip_catalogue_altlabels altLabel [{"@value":"CH3HgCl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… [{"@value":"CH3HgCl","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consens… Removed 1 catalogue altLabel value(s): 'NSC 19998' (registry code)
308,259 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/1b391561-3951-… associations resolved on the elementary layer
389,106 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CH3ClHg"],… typed the way the ontology types it
396,120 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

23 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260822T0600486828500000/4883 prefLabel ef:agent/bootstrap_labels ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v0 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v1
ef:activity/change/20260822T0600486828500000/4884 name ef:agent/bootstrap_labels ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v1 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v2
ef:activity/change/20260822T0600486828500000/4885 synonyms ef:agent/bootstrap_labels ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v2 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v3
ef:activity/change/20260822T0600486828500000/54464 context ef:agent/default_context_mapping ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v3 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v4
ef:activity/change/20260822T0600486828500000/54465 context_iri ef:agent/default_context_mapping ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v4 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v5
ef:activity/change/20260822T0600486828500000/214970 unit_iri ef:agent/unit_normalization ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v5 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v6
ef:activity/change/20260822T0600486828500000/222220 prefLabel ef:agent/normalize_name_case ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v6 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v7
ef:activity/change/20260822T0600486828500000/226769 ec_numbers ef:agent/ec_cross_check ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v7 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v8
ef:activity/change/20260822T0600486828500000/231870 properties ef:agent/enrich_references ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v8 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v9
ef:activity/change/20260822T0600486828500000/231871 skos_definition ef:agent/enrich_references ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v9 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v10
ef:activity/change/20260822T0600486828500000/231872 references ef:agent/enrich_references ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v10 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v11
ef:activity/change/20260822T0600486828500000/249663 properties ef:agent/rdkit_pre_consensus ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v11 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v12
ef:activity/change/20260822T0600486828500000/254997 altLabel ef:agent/chebi_altlabels ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v12 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v13
ef:activity/change/20260822T0600486828500000/265087 prefLabel ef:agent/consensus_match ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v13 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v14
ef:activity/change/20260822T0600486828500000/265088 altLabel ef:agent/consensus_match ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v14 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v15
ef:activity/change/20260822T0600486828500000/265089 altLabel ef:agent/consensus_match ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v15 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v16
ef:activity/change/20260822T0600486828500000/265090 cas_match_labels ef:agent/consensus_match ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v16 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v17
ef:activity/change/20260822T0600486828500000/274797 properties ef:agent/opsin_iupac ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v17 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v18
ef:activity/change/20260822T0600486828500000/281267 properties ef:agent/rdkit_post_consensus ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v18 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v19
ef:activity/change/20260822T0600486828500000/288261 altLabel ef:agent/strip_catalogue_altlabels ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v19 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v20
ef:activity/change/20260822T0600486828500000/308259 concept_associations ef:agent/carry_associations_onto_flows ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v20 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v21
ef:activity/change/20260822T0600486828500000/389106 properties ef:agent/normalise_property_values ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v21 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v22
ef:activity/change/20260822T0600486828500000/396120 types ef:agent/link_flows_to_their_substance ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v22 ef:flow/1b391561-3951-4127-a2d9-5aeb87c62f67/v23

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