Harmaline
Everything that changed this flow. Back to the flow
20929ec7-338b-4bef-9dbd-c374e34cfdfd
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 407285' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=harmaline||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'304-21-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c1e6eb62637d8b0b: {'304-21-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['304-21-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28172']; candidate_pubchem_cids=[3564, 138448]; selected_pubchem_cids=[3564]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 18,162 | bootstrap_labels | prefLabel | — | [{"@value":"harmaline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 18,163 | bootstrap_labels | name | harmaline | — | Purged legacy name field to enforce prefLabel usage |
| 18,164 | bootstrap_labels | synonyms | ["1-Methyl-7-methoxy-3,4-dihydro- beta-carboline","1-Methyl-7-methoxy-3,4-dihydro-.beta.-carboline","1-Methyl-7-methoxy… | [] | Removed legacy synonyms field in favor of structured labels |
| 58,494 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Ground level","population_density":"Urban (>1000 people/square mil… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 58,495 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-grle-ur10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to urban air close to ground |
| 219,283 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,236 | normalize_name_case | prefLabel | [{"@value":"harmaline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Harmaline","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 244,181 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 244,182 | enrich_references | skos_definition | — | [{"@value":"A harmala alkaloid in which the harman skeleton is methoxy-substituted at C-7 and has been reduced across t… | Merged ChEBI/PubChem definitions into skos:definition |
| 244,183 | enrich_references | references | [] | [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J11.607F","provenance":{"prov:wasGeneratedBy":"enrich_referenc… | Added references with provenance; cas_numbers=['304-21-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28172']; candidate_pubchem_cids=[3564, 138448]; selected_pubchem_cids=[3564]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,216 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | rdkit_pre_consensus from 'CC1=NCCC2=C1NC3=C2C=CC(=C3)OC'; added: monoisotopic_mass |
| 256,771 | chebi_altlabels | altLabel | [] | [{"@value":"3,4-Dihydroharmine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,504 | consensus_match | altLabel | [{"@value":"3,4-Dihydroharmine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"3,4-Dihydroharmine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | group_key=harmaline||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=304-21-2; added Common Chemistry CAS names as altLabel: 1-Methyl-7-methoxy-3,4-dihydro-β-carboline, 3,4-Dihydro-7-methoxy-1-methyl-9<em>H</em>-pyrido[3,4-<em>b</em>]indole, 3<em>H</em>-Pyrido[3,4-<em>b</em>]indole, 4,9-dihydro-7-methoxy-1-methyl-, 4,9-Dihydro-7-methoxy-1-methyl-3<em>H</em>-pyrido[3,4-<em>b</em>]indole, MeSH ID: D006246, NSC 407285; object_uuid=fo-c1e6eb62637d8b0b |
| 267,505 | consensus_match | cas_match_labels | — | {"304-21-2":"exactMatch"} | group_key=harmaline||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'304-21-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-c1e6eb62637d8b0b: {'304-21-2': 'exactMatch'} |
| 278,424 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Harmaline' |
| 285,185 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | rdkit_post_consensus from 'COc1ccc2c3c([nH]c2c1)C(C)=NCC3'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 290,916 | strip_catalogue_altlabels | altLabel | [{"@value":"3,4-Dihydroharmine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"3,4-Dihydroharmine","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Removed 1 catalogue altLabel value(s): 'NSC 407285' (registry code) |
| 310,269 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/20929ec7-338b-… | associations resolved on the elementary layer |
| 392,791 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C13H14N2O"… | typed the way the ontology types it |
| 401,425 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/18162 | prefLabel | ef:agent/bootstrap_labels | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v0 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v1 |
| ef:activity/change/20260822T0600486828500000/18163 | name | ef:agent/bootstrap_labels | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v1 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v2 |
| ef:activity/change/20260822T0600486828500000/18164 | synonyms | ef:agent/bootstrap_labels | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v2 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v3 |
| ef:activity/change/20260822T0600486828500000/58494 | context | ef:agent/default_context_mapping | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v3 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v4 |
| ef:activity/change/20260822T0600486828500000/58495 | context_iri | ef:agent/default_context_mapping | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v4 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v5 |
| ef:activity/change/20260822T0600486828500000/219283 | unit_iri | ef:agent/unit_normalization | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v5 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v6 |
| ef:activity/change/20260822T0600486828500000/225236 | prefLabel | ef:agent/normalize_name_case | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v6 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v7 |
| ef:activity/change/20260822T0600486828500000/244181 | properties | ef:agent/enrich_references | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v7 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v8 |
| ef:activity/change/20260822T0600486828500000/244182 | skos_definition | ef:agent/enrich_references | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v8 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v9 |
| ef:activity/change/20260822T0600486828500000/244183 | references | ef:agent/enrich_references | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v9 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v10 |
| ef:activity/change/20260822T0600486828500000/253216 | properties | ef:agent/rdkit_pre_consensus | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v10 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v11 |
| ef:activity/change/20260822T0600486828500000/256771 | altLabel | ef:agent/chebi_altlabels | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v11 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v12 |
| ef:activity/change/20260822T0600486828500000/267504 | altLabel | ef:agent/consensus_match | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v12 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v13 |
| ef:activity/change/20260822T0600486828500000/267505 | cas_match_labels | ef:agent/consensus_match | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v13 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v14 |
| ef:activity/change/20260822T0600486828500000/278424 | properties | ef:agent/opsin_iupac | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v14 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v15 |
| ef:activity/change/20260822T0600486828500000/285185 | properties | ef:agent/rdkit_post_consensus | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v15 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v16 |
| ef:activity/change/20260822T0600486828500000/290916 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v16 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v17 |
| ef:activity/change/20260822T0600486828500000/310269 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v17 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v18 |
| ef:activity/change/20260822T0600486828500000/392791 | properties | ef:agent/normalise_property_values | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v18 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v19 |
| ef:activity/change/20260822T0600486828500000/401425 | types | ef:agent/link_flows_to_their_substance | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v19 | ef:flow/20929ec7-338b-4bef-9dbd-c374e34cfdfd/v20 |