Manganese(2+)
Everything that changed this flow. Back to the flow
21a70472-6abb-4d7c-a94c-aee276e7bef3
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 4 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, consensus_match, normalize_name_case | cas=16397-91-4; cc_chebi_agreed_name='Manganese(2+)'; object_uuid=fo-80b64837f895a1ee |
| cas_match_labels | 1 | consensus_match | group_key=manganese(ii)||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'16397-91-4': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-80b64837f895a1ee: {'16397-91-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['16397-91-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29035']; candidate_pubchem_cids=[27854]; selected_pubchem_cids=[27854]; formula_similarity_expected=['Mn']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,461 | bootstrap_labels | prefLabel | — | [{"@value":"manganese (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Bootstrapped prefLabel from legacy name field |
| 4,462 | bootstrap_labels | name | manganese (ii) | — | Purged legacy name field to enforce prefLabel usage |
| 4,463 | bootstrap_labels | synonyms | ["element in usetox"] | [] | Removed legacy synonyms field in favor of structured labels |
| 59,132 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 59,133 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 214,835 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,123 | normalize_name_case | prefLabel | [{"@value":"manganese (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | [{"@value":"Manganese (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,476 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,477 | enrich_references | skos_definition | — | [{"@value":"A divalent metal cation in which the metal is manganese.","@language":"en","provenance":{"prov:wasGenerated… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,478 | enrich_references | references | [] | [{"@id":"gmelin:6858","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['16397-91-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29035']; candidate_pubchem_cids=[27854]; selected_pubchem_cids=[27854]; formula_similarity_expected=['Mn']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,557 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | rdkit_pre_consensus from '[Mn+2]'; added: monoisotopic_mass |
| 254,947 | chebi_altlabels | altLabel | [] | [{"@value":"MANGANESE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Added 10 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,541 | consensus_match | prefLabel | [{"@value":"Manganese (ii)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":… | [{"@value":"Manganese(2+)","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"c… | cas=16397-91-4; cc_chebi_agreed_name='Manganese(2+)'; object_uuid=fo-80b64837f895a1ee |
| 268,542 | consensus_match | altLabel | [{"@value":"MANGANESE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"MANGANESE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | cas=16397-91-4; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-80b64837f895a1ee |
| 268,543 | consensus_match | altLabel | [{"@value":"MANGANESE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"MANGANESE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | group_key=manganese(ii)||dimension=Environmental > media=Ground > geography=Unknown; cas=16397-91-4; added Common Chemistry CAS names as altLabel: Manganese (Mn<sup>2+</sup>), Manganese cation (Mn<sup>2+</sup>), Manganese dication, Manganese ion(2+), Manganese(II) ion, Manganous cation, Manganous dication; object_uuid=fo-80b64837f895a1ee |
| 268,544 | consensus_match | cas_match_labels | — | {"16397-91-4":"exactMatch"} | group_key=manganese(ii)||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'pubchem']; cas_sources={'16397-91-4': ['chebi', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-80b64837f895a1ee: {'16397-91-4': 'exactMatch'} |
| 274,705 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Manganese(2+)' |
| 281,161 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | rdkit_post_consensus from '[Mn+2]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,230 | dedupe_altlabels | altLabel | [{"@value":"MANGANESE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | [{"@value":"MANGANESE (II) ION","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedT… | Deduplicated altLabel values and removed entries matching prefLabel |
| 310,608 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/21a70472-6abb-… | associations resolved on the elementary layer |
| 389,012 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | typed the way the ontology types it |
| 395,975 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomCation"] | the substance's answer, copied onto its flow |
| 395,976 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Mn","Mn+2"… | the substance's answer, copied onto its flow |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/4461 | prefLabel | ef:agent/bootstrap_labels | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v0 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v1 |
| ef:activity/change/20260820T0738569779880000/4462 | name | ef:agent/bootstrap_labels | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v1 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v2 |
| ef:activity/change/20260820T0738569779880000/4463 | synonyms | ef:agent/bootstrap_labels | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v2 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v3 |
| ef:activity/change/20260820T0738569779880000/59132 | context | ef:agent/default_context_mapping | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v3 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v4 |
| ef:activity/change/20260820T0738569779880000/59133 | context_iri | ef:agent/default_context_mapping | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v4 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v5 |
| ef:activity/change/20260820T0738569779880000/214835 | unit_iri | ef:agent/unit_normalization | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v5 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v6 |
| ef:activity/change/20260820T0738569779880000/222123 | prefLabel | ef:agent/normalize_name_case | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v6 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v7 |
| ef:activity/change/20260820T0738569779880000/231476 | properties | ef:agent/enrich_references | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v7 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v8 |
| ef:activity/change/20260820T0738569779880000/231477 | skos_definition | ef:agent/enrich_references | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v8 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v9 |
| ef:activity/change/20260820T0738569779880000/231478 | references | ef:agent/enrich_references | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v9 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v10 |
| ef:activity/change/20260820T0738569779880000/249557 | properties | ef:agent/rdkit_pre_consensus | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v10 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v11 |
| ef:activity/change/20260820T0738569779880000/254947 | altLabel | ef:agent/chebi_altlabels | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v11 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v12 |
| ef:activity/change/20260820T0738569779880000/268541 | prefLabel | ef:agent/consensus_match | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v12 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v13 |
| ef:activity/change/20260820T0738569779880000/268542 | altLabel | ef:agent/consensus_match | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v13 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v14 |
| ef:activity/change/20260820T0738569779880000/268543 | altLabel | ef:agent/consensus_match | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v14 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v15 |
| ef:activity/change/20260820T0738569779880000/268544 | cas_match_labels | ef:agent/consensus_match | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v15 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v16 |
| ef:activity/change/20260820T0738569779880000/274705 | properties | ef:agent/opsin_iupac | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v16 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v17 |
| ef:activity/change/20260820T0738569779880000/281161 | properties | ef:agent/rdkit_post_consensus | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v17 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v18 |
| ef:activity/change/20260820T0738569779880000/292230 | altLabel | ef:agent/dedupe_altlabels | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v18 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v19 |
| ef:activity/change/20260820T0738569779880000/310608 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v19 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v20 |
| ef:activity/change/20260820T0738569779880000/389012 | properties | ef:agent/normalise_property_values | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v20 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v21 |
| ef:activity/change/20260820T0738569779880000/395975 | types | ef:agent/link_flows_to_their_substance | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v21 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v22 |
| ef:activity/change/20260820T0738569779880000/395976 | properties | ef:agent/link_flows_to_their_substance | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v22 | ef:flow/21a70472-6abb-4d7c-a94c-aee276e7bef3/v23 |