Menadione
Everything that changed this flow. Back to the flow
230ff9e4-605d-466e-b03c-e8db9f2961a6
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 1 catalogue altLabel value(s): 'NSC 4170' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=menadione||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'58-27-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e8bd26f7b7f9490c: {'58-27-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['58-27-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28869']; candidate_pubchem_cids=[4055, 53442274]; selected_pubchem_cids=[4055]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 18,664 | bootstrap_labels | prefLabel | — | [{"@value":"menadione","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 18,665 | bootstrap_labels | name | menadione | — | Purged legacy name field to enforce prefLabel usage |
| 18,666 | bootstrap_labels | synonyms | ["menadione","1,4-dihydro-1,4-dioxo-2-methylnaphthalene","2-methyl-1,4-dihydronaphthalene-1,4-dione","2-methyl-1,4-naph… | [] | Removed legacy synonyms field in favor of structured labels |
| 59,946 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 59,947 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-aicrhe | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 219,434 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,340 | normalize_name_case | prefLabel | [{"@value":"menadione","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Menadione","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 244,596 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 244,597 | enrich_references | skos_definition | — | [{"@value":"A member of the class of 1,4-naphthoquinones that is 1,4-naphthoquinone which is substituted at position 2… | Merged ChEBI/PubChem definitions into skos:definition |
| 244,598 | enrich_references | references | [] | [{"@id":"drugcentral:1683","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['58-27-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_28869']; candidate_pubchem_cids=[4055, 53442274]; selected_pubchem_cids=[4055]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,338 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | rdkit_pre_consensus from 'CC1=CC(=O)C2=CC=CC=C2C1=O'; added: monoisotopic_mass |
| 256,829 | chebi_altlabels | altLabel | [] | [{"@value":"2-Methyl-1,4-naphthochinon","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Added 16 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,562 | consensus_match | altLabel | [{"@value":"2-Methyl-1,4-naphthochinon","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"2-Methyl-1,4-naphthochinon","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | group_key=menadione||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=58-27-5; added Common Chemistry CAS names as altLabel: 1,4-Dihydro-1,4-dioxo-2-methylnaphthalene, 1,4-Naphthalenedione, 2-methyl-, 1,4-Naphthoquinone, 2-methyl-, 2-Methyl-1,4-dihydronaphthalene-1,4-dione, 2-Methyl-1,4-naphthodione, K-Thrombyl, K-Vitan, Kaergona, Kanone, Kappaxan, Karcon, Kareon, Kativ-G, Kayklot, Kaykot, Kaynone, Kayquinone, Kipca, Kipca-Oil Soluble, Klottone, Koaxin, Kolklot, MNQ, Mitenon, Mitenone, NSC 4170, Panosine, Prokayvit, SeaKleen 500SC, SeaKleen 800WP, Synkay, Thyloquinone, Vitamin K<sub>0</sub>, Vitamin K<sub>2(0)</sub>, β-Methyl-1,4-naphthoquinone; object_uuid=fo-e8bd26f7b7f9490c |
| 268,563 | consensus_match | cas_match_labels | — | {"58-27-5":"exactMatch"} | group_key=menadione||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'58-27-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-e8bd26f7b7f9490c: {'58-27-5': 'exactMatch'} |
| 278,549 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '2-methyl-1,4-naphthalenedione' |
| 285,319 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | rdkit_post_consensus from 'CC1=CC(=O)c2ccccc2C1=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 291,012 | strip_catalogue_altlabels | altLabel | [{"@value":"2-Methyl-1,4-naphthochinon","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | [{"@value":"2-Methyl-1,4-naphthochinon","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAtt… | Removed 1 catalogue altLabel value(s): 'NSC 4170' (registry code) |
| 310,992 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/230ff9e4-605d-… | associations resolved on the elementary layer |
| 392,916 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O2"],… | typed the way the ontology types it |
| 401,614 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/18664 | prefLabel | ef:agent/bootstrap_labels | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v0 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v1 |
| ef:activity/change/20260822T0600486828500000/18665 | name | ef:agent/bootstrap_labels | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v1 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v2 |
| ef:activity/change/20260822T0600486828500000/18666 | synonyms | ef:agent/bootstrap_labels | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v2 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v3 |
| ef:activity/change/20260822T0600486828500000/59946 | context | ef:agent/default_context_mapping | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v3 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v4 |
| ef:activity/change/20260822T0600486828500000/59947 | context_iri | ef:agent/default_context_mapping | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v4 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v5 |
| ef:activity/change/20260822T0600486828500000/219434 | unit_iri | ef:agent/unit_normalization | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v5 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v6 |
| ef:activity/change/20260822T0600486828500000/225340 | prefLabel | ef:agent/normalize_name_case | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v6 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v7 |
| ef:activity/change/20260822T0600486828500000/244596 | properties | ef:agent/enrich_references | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v7 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v8 |
| ef:activity/change/20260822T0600486828500000/244597 | skos_definition | ef:agent/enrich_references | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v8 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v9 |
| ef:activity/change/20260822T0600486828500000/244598 | references | ef:agent/enrich_references | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v9 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v10 |
| ef:activity/change/20260822T0600486828500000/253338 | properties | ef:agent/rdkit_pre_consensus | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v10 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v11 |
| ef:activity/change/20260822T0600486828500000/256829 | altLabel | ef:agent/chebi_altlabels | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v11 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v12 |
| ef:activity/change/20260822T0600486828500000/268562 | altLabel | ef:agent/consensus_match | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v12 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v13 |
| ef:activity/change/20260822T0600486828500000/268563 | cas_match_labels | ef:agent/consensus_match | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v13 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v14 |
| ef:activity/change/20260822T0600486828500000/278549 | properties | ef:agent/opsin_iupac | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v14 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v15 |
| ef:activity/change/20260822T0600486828500000/285319 | properties | ef:agent/rdkit_post_consensus | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v15 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v16 |
| ef:activity/change/20260822T0600486828500000/291012 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v16 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v17 |
| ef:activity/change/20260822T0600486828500000/310992 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v17 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v18 |
| ef:activity/change/20260822T0600486828500000/392916 | properties | ef:agent/normalise_property_values | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v18 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v19 |
| ef:activity/change/20260822T0600486828500000/401614 | types | ef:agent/link_flows_to_their_substance | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v19 | ef:flow/230ff9e4-605d-466e-b03c-e8db9f2961a6/v20 |