Carbon Monoxide (biogenic)
Everything that changed this flow. Back to the flow
242520d7-9e70-4422-af5c-6ea7042703fb
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, strip_cross_object_altlabels, strip_qualifier_altlabels | Removed 5 altLabel value(s) lacking qualifier 'biogenic': 'C#O', 'CO', '[CO]', 'carbon monooxide', 'carbon(II) oxide' |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=carbonmonoxide(biogenic)||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'630-08-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ce9e4bacf707af37: {'630-08-0': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| origin_qualifier | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| parent_flow_object_id | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['630-08-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17245']; candidate_pubchem_cids=[281, 712]; selected_pubchem_cids=[281]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 18,857 | bootstrap_labels | prefLabel | — | [{"@value":"carbon monoxide (biogenic)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAt… | Bootstrapped prefLabel from legacy name field |
| 18,858 | bootstrap_labels | name | carbon monoxide (biogenic) | — | Purged legacy name field to enforce prefLabel usage |
| 60,622 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Medium stack, <150 meters","population_density":"Rural (<1000 peop… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 60,623 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-mest15me-ru10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 219,496 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,388 | normalize_name_case | prefLabel | [{"@value":"carbon monoxide (biogenic)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAt… | [{"@value":"Carbon Monoxide (biogenic)","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAt… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 244,754 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 244,755 | enrich_references | skos_definition | — | [{"@value":"A one-carbon compound in which the carbon is joined only to a single oxygen. It is a colourless, odourless,… | Merged ChEBI/PubChem definitions into skos:definition |
| 244,756 | enrich_references | references | [] | [{"@id":"beilstein:1900508","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['630-08-0']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17245']; candidate_pubchem_cids=[281, 712]; selected_pubchem_cids=[281]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,386 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | rdkit_pre_consensus from '[C-]#[O+]'; added: monoisotopic_mass |
| 256,849 | chebi_altlabels | altLabel | [] | [{"@value":"C#O","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,478 | strip_cross_object_altlabels | altLabel | [{"@value":"C#O","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | [{"@value":"C#O","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'CARBON MONOXIDE' |
| 264,893 | consensus_match | cas_match_labels | — | {"630-08-0":"exactMatch"} | group_key=carbonmonoxide(biogenic)||dimension=Environmental > media=Air > strata=Medium stack, <150 meters > population_density=Rural (<1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'630-08-0': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ce9e4bacf707af37: {'630-08-0': 'exactMatch'} |
| 278,613 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'carbon monooxide' |
| 285,386 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | rdkit_post_consensus from '[C]=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,259 | strip_qualifier_altlabels | altLabel | [{"@value":"C#O","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | [] | Removed 5 altLabel value(s) lacking qualifier 'biogenic': 'C#O', 'CO', '[CO]', 'carbon monooxide', 'carbon(II) oxide' |
| 311,350 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/242520d7-9e70-… | associations resolved on the elementary layer |
| 392,980 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["CO"],"atte… | typed the way the ontology types it |
| 401,703 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 401,704 | link_flows_to_their_substance | origin_qualifier | — | biogenic | the substance's answer, copied onto its flow |
| 401,705 | link_flows_to_their_substance | parent_flow_object_id | — | fo-a379de24c34d0838 | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/18857 | prefLabel | ef:agent/bootstrap_labels | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v0 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v1 |
| ef:activity/change/20260820T1416470405690000/18858 | name | ef:agent/bootstrap_labels | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v1 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v2 |
| ef:activity/change/20260820T1416470405690000/60622 | context | ef:agent/default_context_mapping | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v2 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v3 |
| ef:activity/change/20260820T1416470405690000/60623 | context_iri | ef:agent/default_context_mapping | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v3 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v4 |
| ef:activity/change/20260820T1416470405690000/219496 | unit_iri | ef:agent/unit_normalization | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v4 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v5 |
| ef:activity/change/20260820T1416470405690000/225388 | prefLabel | ef:agent/normalize_name_case | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v5 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v6 |
| ef:activity/change/20260820T1416470405690000/244754 | properties | ef:agent/enrich_references | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v6 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v7 |
| ef:activity/change/20260820T1416470405690000/244755 | skos_definition | ef:agent/enrich_references | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v7 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v8 |
| ef:activity/change/20260820T1416470405690000/244756 | references | ef:agent/enrich_references | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v8 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v9 |
| ef:activity/change/20260820T1416470405690000/253386 | properties | ef:agent/rdkit_pre_consensus | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v9 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v10 |
| ef:activity/change/20260820T1416470405690000/256849 | altLabel | ef:agent/chebi_altlabels | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v10 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v11 |
| ef:activity/change/20260820T1416470405690000/257478 | altLabel | ef:agent/strip_cross_object_altlabels | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v11 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v12 |
| ef:activity/change/20260820T1416470405690000/264893 | cas_match_labels | ef:agent/consensus_match | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v12 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v13 |
| ef:activity/change/20260820T1416470405690000/278613 | properties | ef:agent/opsin_iupac | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v13 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v14 |
| ef:activity/change/20260820T1416470405690000/285386 | properties | ef:agent/rdkit_post_consensus | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v14 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v15 |
| ef:activity/change/20260820T1416470405690000/287259 | altLabel | ef:agent/strip_qualifier_altlabels | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v15 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v16 |
| ef:activity/change/20260820T1416470405690000/311350 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v16 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v17 |
| ef:activity/change/20260820T1416470405690000/392980 | properties | ef:agent/normalise_property_values | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v17 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v18 |
| ef:activity/change/20260820T1416470405690000/401703 | types | ef:agent/link_flows_to_their_substance | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v18 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v19 |
| ef:activity/change/20260820T1416470405690000/401704 | origin_qualifier | ef:agent/link_flows_to_their_substance | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v19 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v20 |
| ef:activity/change/20260820T1416470405690000/401705 | parent_flow_object_id | ef:agent/link_flows_to_their_substance | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v20 | ef:flow/242520d7-9e70-4422-af5c-6ea7042703fb/v21 |