Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 17558' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=100-54-9; cc_chebi_agreed_name='3-Cyanopyridine'; object_uuid=fo-6385a5c1bba68c64
cas_match_labels 1 consensus_match group_key=nicotinonitrile||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'100-54-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-6385a5c1bba68c64: {'100-54-9': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['100-54-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_86556']; candidate_pubchem_cids=[79, 8082, 186003, 2779091]; selected_pubchem_cids=[79]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
4,744 bootstrap_labels prefLabel [{"@value":"nicotinonitrile","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Bootstrapped prefLabel from legacy name field
4,745 bootstrap_labels name nicotinonitrile Purged legacy name field to enforce prefLabel usage
4,746 bootstrap_labels synonyms ["3-Azabenzonitrile","3-Cyjanopirydyna","3-PYRIDINECARBONITRILE","3-Pyridinecarboxylic acid, nitrile","3-Pyridinenitril… [] Removed legacy synonyms field in favor of structured labels
61,184 default_context_mapping context {"dimension":"Environmental","media":"Water","water_body":"Long-term"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
61,185 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-wate-lote Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to water, unspecified (long-term)
214,924 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
222,187 normalize_name_case prefLabel [{"@value":"nicotinonitrile","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"Nicotinonitrile","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
231,740 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
231,741 enrich_references skos_definition [{"@value":"A cyanopyridine carrying the cyano group at position 3.","@language":"en","provenance":{"prov:wasGeneratedB… Merged ChEBI/PubChem definitions into skos:definition
231,742 enrich_references references [] [{"@id":"http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J149.678F","provenance":{"prov:wasGeneratedBy":"enrich_referen… Added references with provenance; cas_numbers=['100-54-9']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_86556']; candidate_pubchem_cids=[79, 8082, 186003, 2779091]; selected_pubchem_cids=[79]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
249,627 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… rdkit_pre_consensus from 'C1=CC(=CN=C1)C#N'; added: monoisotopic_mass
254,977 chebi_altlabels altLabel [] [{"@value":"3-azabenzonitrile","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
269,865 consensus_match prefLabel [{"@value":"Nicotinonitrile","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… [{"@value":"3-Cyanopyridine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":… cas=100-54-9; cc_chebi_agreed_name='3-Cyanopyridine'; object_uuid=fo-6385a5c1bba68c64
269,866 consensus_match altLabel [{"@value":"3-azabenzonitrile","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… [{"@value":"3-azabenzonitrile","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… cas=100-54-9; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-6385a5c1bba68c64
269,867 consensus_match altLabel [{"@value":"3-azabenzonitrile","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… [{"@value":"3-azabenzonitrile","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… group_key=nicotinonitrile||dimension=Environmental > media=Water > water_body=Ocean; cas=100-54-9; added Common Chemistry CAS names as altLabel: NSC 17558, β-Cyanopyridine; object_uuid=fo-6385a5c1bba68c64
269,868 consensus_match cas_match_labels {"100-54-9":"exactMatch"} group_key=nicotinonitrile||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'100-54-9': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-6385a5c1bba68c64: {'100-54-9': 'exactMatch'}
274,757 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '3-Cyanopyridine'
281,226 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… rdkit_post_consensus from 'N#Cc1cccnc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
288,227 strip_catalogue_altlabels altLabel [{"@value":"3-azabenzonitrile","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… [{"@value":"3-azabenzonitrile","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo… Removed 1 catalogue altLabel value(s): 'NSC 17558' (registry code)
311,611 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/251af126-bf36-… associations resolved on the elementary layer
389,068 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C6H4N2"],"… typed the way the ontology types it
396,069 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/4744 prefLabel ef:agent/bootstrap_labels ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v0 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v1
ef:activity/change/20260821T1554374006150000/4745 name ef:agent/bootstrap_labels ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v1 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v2
ef:activity/change/20260821T1554374006150000/4746 synonyms ef:agent/bootstrap_labels ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v2 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v3
ef:activity/change/20260821T1554374006150000/61184 context ef:agent/default_context_mapping ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v3 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v4
ef:activity/change/20260821T1554374006150000/61185 context_iri ef:agent/default_context_mapping ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v4 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v5
ef:activity/change/20260821T1554374006150000/214924 unit_iri ef:agent/unit_normalization ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v5 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v6
ef:activity/change/20260821T1554374006150000/222187 prefLabel ef:agent/normalize_name_case ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v6 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v7
ef:activity/change/20260821T1554374006150000/231740 properties ef:agent/enrich_references ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v7 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v8
ef:activity/change/20260821T1554374006150000/231741 skos_definition ef:agent/enrich_references ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v8 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v9
ef:activity/change/20260821T1554374006150000/231742 references ef:agent/enrich_references ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v9 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v10
ef:activity/change/20260821T1554374006150000/249627 properties ef:agent/rdkit_pre_consensus ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v10 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v11
ef:activity/change/20260821T1554374006150000/254977 altLabel ef:agent/chebi_altlabels ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v11 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v12
ef:activity/change/20260821T1554374006150000/269865 prefLabel ef:agent/consensus_match ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v12 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v13
ef:activity/change/20260821T1554374006150000/269866 altLabel ef:agent/consensus_match ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v13 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v14
ef:activity/change/20260821T1554374006150000/269867 altLabel ef:agent/consensus_match ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v14 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v15
ef:activity/change/20260821T1554374006150000/269868 cas_match_labels ef:agent/consensus_match ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v15 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v16
ef:activity/change/20260821T1554374006150000/274757 properties ef:agent/opsin_iupac ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v16 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v17
ef:activity/change/20260821T1554374006150000/281226 properties ef:agent/rdkit_post_consensus ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v17 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v18
ef:activity/change/20260821T1554374006150000/288227 altLabel ef:agent/strip_catalogue_altlabels ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v18 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v19
ef:activity/change/20260821T1554374006150000/311611 concept_associations ef:agent/carry_associations_onto_flows ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v19 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v20
ef:activity/change/20260821T1554374006150000/389068 properties ef:agent/normalise_property_values ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v20 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v21
ef:activity/change/20260821T1554374006150000/396069 types ef:agent/link_flows_to_their_substance ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v21 ef:flow/251af126-bf36-44a9-a93f-cc90963e2832/v22

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