Plumbagin
Everything that changed this flow. Back to the flow
263d001d-45d0-4110-a95e-de52dd212e5a
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 4 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'NSC 236613' (registry code), 'NSC 688284' (registry code) |
| prefLabel | 2 | bootstrap_labels, consensus_match | cas=481-42-5; cc_chebi_agreed_name='Plumbagin'; object_uuid=fo-d7fafc8a297c424e |
| cas_match_labels | 1 | consensus_match | group_key=5-hydroxy-2-methyl-1,4-naphthoquinone||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'481-42-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d7fafc8a297c424e: {'481-42-5': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['481-42-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_8273']; candidate_pubchem_cids=[10205]; selected_pubchem_cids=[10205]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 13,099 | bootstrap_labels | prefLabel | — | [{"@value":"5-hydroxy-2-methyl-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels",… | Bootstrapped prefLabel from legacy name field |
| 13,100 | bootstrap_labels | name | 5-hydroxy-2-methyl-1,4-naphthoquinone | — | Purged legacy name field to enforce prefLabel usage |
| 13,101 | bootstrap_labels | synonyms | ["1,4-NAPHTHOQUINONE, 5-HYDROXY-2-METHYL-","1,4-Naphthalenedione, 5-hydroxy-2-methyl-","1,4-Naphthalenedione, 5-hydroxy… | [] | Removed legacy synonyms field in favor of structured labels |
| 61,816 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Medium stack, <150 meters","population_density":"Rural (<1000 peop… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 61,817 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-mest15me-ru10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air or from high stacks |
| 217,670 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 239,607 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 239,608 | enrich_references | skos_definition | — | [{"@value":"A hydroxy-1,4-naphthoquinone that is 1,4-naphthoquinone in which the hydrogens at positions 2 and 5 are sub… | Merged ChEBI/PubChem definitions into skos:definition |
| 239,609 | enrich_references | references | [] | [{"@id":"gmelin:959690","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"con… | Added references with provenance; cas_numbers=['481-42-5']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_8273']; candidate_pubchem_cids=[10205]; selected_pubchem_cids=[10205]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,891 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | rdkit_pre_consensus from 'CC1=CC(=O)C2=C(C1=O)C=CC=C2O'; added: monoisotopic_mass |
| 256,171 | chebi_altlabels | altLabel | [] | [{"@value":"2-methyl-5-hydroxy-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 263,102 | consensus_match | prefLabel | [{"@value":"5-hydroxy-2-methyl-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels",… | [{"@value":"Plumbagin","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"conse… | cas=481-42-5; cc_chebi_agreed_name='Plumbagin'; object_uuid=fo-d7fafc8a297c424e |
| 263,103 | consensus_match | altLabel | [{"@value":"2-methyl-5-hydroxy-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"2-methyl-5-hydroxy-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | cas=481-42-5; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-d7fafc8a297c424e |
| 263,104 | consensus_match | altLabel | [{"@value":"2-methyl-5-hydroxy-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"2-methyl-5-hydroxy-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | group_key=5-hydroxy-2-methyl-1,4-naphthoquinone||dimension=Environmental > media=Water > water_body=Ocean; cas=481-42-5; added Common Chemistry CAS names as altLabel: 1,4-Naphthalenedione, 5-hydroxy-2-methyl-, 1,4-Naphthoquinone, 5-hydroxy-2-methyl-, 2-Methyl-5-hydroxy-1,4-naphthalenedione, NSC 236613, NSC 688284; object_uuid=fo-d7fafc8a297c424e |
| 263,105 | consensus_match | cas_match_labels | — | {"481-42-5":"exactMatch"} | group_key=5-hydroxy-2-methyl-1,4-naphthoquinone||dimension=Environmental > media=Water > water_body=Ocean; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'481-42-5': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d7fafc8a297c424e: {'481-42-5': 'exactMatch'} |
| 277,081 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '2-methyl-5-hydroxy-1,4-naphthoquinone' |
| 283,740 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | rdkit_post_consensus from 'CC1=CC(=O)c2c(O)cccc2C1=O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,944 | strip_catalogue_altlabels | altLabel | [{"@value":"2-methyl-5-hydroxy-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | [{"@value":"2-methyl-5-hydroxy-1,4-naphthoquinone","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","… | Removed 2 catalogue altLabel value(s): 'NSC 236613' (registry code), 'NSC 688284' (registry code) |
| 311,927 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/263d001d-45d0-… | associations resolved on the elementary layer |
| 391,433 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C11H8O3"],… | typed the way the ontology types it |
| 399,464 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/13099 | prefLabel | ef:agent/bootstrap_labels | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v0 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v1 |
| ef:activity/change/20260821T1554374006150000/13100 | name | ef:agent/bootstrap_labels | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v1 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v2 |
| ef:activity/change/20260821T1554374006150000/13101 | synonyms | ef:agent/bootstrap_labels | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v2 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v3 |
| ef:activity/change/20260821T1554374006150000/61816 | context | ef:agent/default_context_mapping | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v3 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v4 |
| ef:activity/change/20260821T1554374006150000/61817 | context_iri | ef:agent/default_context_mapping | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v4 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v5 |
| ef:activity/change/20260821T1554374006150000/217670 | unit_iri | ef:agent/unit_normalization | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v5 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v6 |
| ef:activity/change/20260821T1554374006150000/239607 | properties | ef:agent/enrich_references | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v6 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v7 |
| ef:activity/change/20260821T1554374006150000/239608 | skos_definition | ef:agent/enrich_references | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v7 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v8 |
| ef:activity/change/20260821T1554374006150000/239609 | references | ef:agent/enrich_references | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v8 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v9 |
| ef:activity/change/20260821T1554374006150000/251891 | properties | ef:agent/rdkit_pre_consensus | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v9 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v10 |
| ef:activity/change/20260821T1554374006150000/256171 | altLabel | ef:agent/chebi_altlabels | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v10 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v11 |
| ef:activity/change/20260821T1554374006150000/263102 | prefLabel | ef:agent/consensus_match | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v11 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v12 |
| ef:activity/change/20260821T1554374006150000/263103 | altLabel | ef:agent/consensus_match | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v12 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v13 |
| ef:activity/change/20260821T1554374006150000/263104 | altLabel | ef:agent/consensus_match | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v13 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v14 |
| ef:activity/change/20260821T1554374006150000/263105 | cas_match_labels | ef:agent/consensus_match | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v14 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v15 |
| ef:activity/change/20260821T1554374006150000/277081 | properties | ef:agent/opsin_iupac | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v15 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v16 |
| ef:activity/change/20260821T1554374006150000/283740 | properties | ef:agent/rdkit_post_consensus | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v16 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v17 |
| ef:activity/change/20260821T1554374006150000/289944 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v17 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v18 |
| ef:activity/change/20260821T1554374006150000/311927 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v18 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v19 |
| ef:activity/change/20260821T1554374006150000/391433 | properties | ef:agent/normalise_property_values | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v19 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v20 |
| ef:activity/change/20260821T1554374006150000/399464 | types | ef:agent/link_flows_to_their_substance | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v20 | ef:flow/263d001d-45d0-4110-a95e-de52dd212e5a/v21 |