Consensus flow list

By field

13 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 4 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 1 catalogue altLabel value(s): 'NSC 5080' (registry code)
prefLabel 3 bootstrap_labels, consensus_match, normalize_name_case cas=626-64-2; cc_chebi_agreed_name='4-Hydroxypyridine'; object_uuid=fo-b5deb088a2657497
cas_match_labels 1 consensus_match group_key=pyridin-4-ol||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'626-64-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-b5deb088a2657497: {'626-64-2': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['626-64-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_87614']; candidate_pubchem_cids=[12290, 10997327]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

22
# Step Field From To Why
16,064 bootstrap_labels prefLabel [{"@value":"pyridin-4-ol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Bootstrapped prefLabel from legacy name field
16,065 bootstrap_labels name pyridin-4-ol Purged legacy name field to enforce prefLabel usage
19,180 bootstrap_labels synonyms ["pyridin-4-ol","4-hydroxypyridine","peridi01","(4-pyridinol)",".gamma.-Hydroxypyridine",".gamma.-Pyridone","1H-pyridin… [] Removed legacy synonyms field in favor of structured labels
61,840 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
61,841 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-aicrhe Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
218,616 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
224,784 normalize_name_case prefLabel [{"@value":"pyridin-4-ol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… [{"@value":"Pyridin-4-ol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
242,304 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=0)
242,305 enrich_references skos_definition [{"@value":"A monohydroxypyridine that is pyridine in which the hydrogen at position 4 has been replaced by a hydroxy g… Merged ChEBI/PubChem definitions into skos:definition
242,306 enrich_references references [] [{"@id":"https://commonchemistry.cas.org/detail?cas_rn=626-64-2","provenance":{"prov:wasGeneratedBy":"enrich_references… Added references with provenance; cas_numbers=['626-64-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_87614']; candidate_pubchem_cids=[12290, 10997327]; selected_pubchem_cids=[]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
252,679 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… rdkit_pre_consensus from 'Oc1ccncc1'; added: monoisotopic_mass
256,512 chebi_altlabels altLabel [] [{"@value":"4-Pyridinol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… Added 2 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
271,202 consensus_match prefLabel [{"@value":"Pyridin-4-ol","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"c… [{"@value":"4-Hydroxypyridine","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo… cas=626-64-2; cc_chebi_agreed_name='4-Hydroxypyridine'; object_uuid=fo-b5deb088a2657497
271,203 consensus_match altLabel [{"@value":"4-Pyridinol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… [{"@value":"4-Pyridinol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… cas=626-64-2; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-b5deb088a2657497
271,204 consensus_match altLabel [{"@value":"4-Pyridinol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… [{"@value":"4-Pyridinol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… group_key=pyridin-4-ol||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); cas=626-64-2; added Common Chemistry CAS names as altLabel: 4-Pyridol, NSC 5080, γ-Hydroxypyridine; object_uuid=fo-b5deb088a2657497
271,205 consensus_match cas_match_labels {"626-64-2":"exactMatch"} group_key=pyridin-4-ol||dimension=Environmental > media=Air > strata=Ground level > population_density=Urban (>1000 people/square mile); group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'626-64-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-b5deb088a2657497: {'626-64-2': 'exactMatch'}
277,885 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '4-Hydroxypyridine'
284,595 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… rdkit_post_consensus from 'Oc1ccncc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
290,521 strip_catalogue_altlabels altLabel [{"@value":"4-Pyridinol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… [{"@value":"4-Pyridinol","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"con… Removed 1 catalogue altLabel value(s): 'NSC 5080' (registry code)
311,939 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/264a7585-f578-… associations resolved on the elementary layer
392,240 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C5H5NO"],"… typed the way the ontology types it
400,603 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow

PROV-O trail

22 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260821T1554374006150000/16064 prefLabel ef:agent/bootstrap_labels ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v0 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v1
ef:activity/change/20260821T1554374006150000/16065 name ef:agent/bootstrap_labels ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v1 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v2
ef:activity/change/20260821T1554374006150000/19180 synonyms ef:agent/bootstrap_labels ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v2 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v3
ef:activity/change/20260821T1554374006150000/61840 context ef:agent/default_context_mapping ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v3 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v4
ef:activity/change/20260821T1554374006150000/61841 context_iri ef:agent/default_context_mapping ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v4 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v5
ef:activity/change/20260821T1554374006150000/218616 unit_iri ef:agent/unit_normalization ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v5 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v6
ef:activity/change/20260821T1554374006150000/224784 prefLabel ef:agent/normalize_name_case ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v6 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v7
ef:activity/change/20260821T1554374006150000/242304 properties ef:agent/enrich_references ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v7 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v8
ef:activity/change/20260821T1554374006150000/242305 skos_definition ef:agent/enrich_references ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v8 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v9
ef:activity/change/20260821T1554374006150000/242306 references ef:agent/enrich_references ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v9 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v10
ef:activity/change/20260821T1554374006150000/252679 properties ef:agent/rdkit_pre_consensus ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v10 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v11
ef:activity/change/20260821T1554374006150000/256512 altLabel ef:agent/chebi_altlabels ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v11 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v12
ef:activity/change/20260821T1554374006150000/271202 prefLabel ef:agent/consensus_match ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v12 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v13
ef:activity/change/20260821T1554374006150000/271203 altLabel ef:agent/consensus_match ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v13 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v14
ef:activity/change/20260821T1554374006150000/271204 altLabel ef:agent/consensus_match ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v14 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v15
ef:activity/change/20260821T1554374006150000/271205 cas_match_labels ef:agent/consensus_match ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v15 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v16
ef:activity/change/20260821T1554374006150000/277885 properties ef:agent/opsin_iupac ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v16 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v17
ef:activity/change/20260821T1554374006150000/284595 properties ef:agent/rdkit_post_consensus ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v17 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v18
ef:activity/change/20260821T1554374006150000/290521 altLabel ef:agent/strip_catalogue_altlabels ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v18 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v19
ef:activity/change/20260821T1554374006150000/311939 concept_associations ef:agent/carry_associations_onto_flows ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v19 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v20
ef:activity/change/20260821T1554374006150000/392240 properties ef:agent/normalise_property_values ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v20 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v21
ef:activity/change/20260821T1554374006150000/400603 types ef:agent/link_flows_to_their_substance ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v21 ef:flow/264a7585-f578-4b7b-b443-677ae414bf14/v22

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