Beryllium
Everything that changed this flow. Back to the flow
29059f1c-6556-11dd-ad8b-0800200c9a66
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Beryllium |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=7440-41-7; added Common Chemistry CAS names as altLabel: Beryllium atom, Beryllium element, Beryllium poisoning, Beryllium-9, Glucinium, MeSH ID: D001608; object_uuid=fo-48c318d9e89b48fb |
| cas_match_labels | 1 | consensus_match | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-41-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-48c318d9e89b48fb: {'7440-41-7': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 231-150-7 from CAS 7440-41-7 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7440-41-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30501', 'http://purl.obolibrary.org/obo/CHEBI_33783']; candidate_pubchem_cids=[139073, 5460467, 101221390]; selected_pubchem_cids=[5460467]; formula_similarity_expected=['Be']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,600 | bootstrap_labels | prefLabel | — | [{"@value":"beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 19,601 | bootstrap_labels | name | beryllium | — | Purged legacy name field to enforce prefLabel usage |
| 19,602 | bootstrap_labels | synonyms | ["AC1NUT9F","BERYLLIUM, ULTRA HIGH PURITY","Be","Be(0)","Beryllium [Beryllium and certain beryllium compounds]","Beryll… | [] | Removed legacy synonyms field in favor of structured labels |
| 63,628 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 63,629 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-aicrhe | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 219,713 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,540 | normalize_name_case | prefLabel | [{"@value":"beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,034 | ec_cross_check | ec_numbers | [] | ["231-150-7"] | Resolved from EC-inventory: 231-150-7 from CAS 7440-41-7 |
| 245,381 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 245,382 | enrich_references | skos_definition | — | [{"@value":"Alkaline earth metal atom with atomic number 4.","@language":"en","provenance":{"prov:wasGeneratedBy":"enri… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,383 | enrich_references | references | [] | [{"@id":"gmelin:16265","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['7440-41-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30501', 'http://purl.obolibrary.org/obo/CHEBI_33783']; candidate_pubchem_cids=[139073, 5460467, 101221390]; selected_pubchem_cids=[5460467]; formula_similarity_expected=['Be']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,565 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | rdkit_pre_consensus from '[Be]'; added: monoisotopic_mass |
| 256,922 | chebi_altlabels | altLabel | [] | [{"@value":"4Be","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | Added 7 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 264,222 | consensus_match | altLabel | [{"@value":"4Be","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | [{"@value":"4Be","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=7440-41-7; added Common Chemistry CAS names as altLabel: Beryllium atom, Beryllium element, Beryllium poisoning, Beryllium-9, Glucinium, MeSH ID: D001608; object_uuid=fo-48c318d9e89b48fb |
| 264,223 | consensus_match | cas_match_labels | — | {"7440-41-7":"exactMatch"} | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-41-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-48c318d9e89b48fb: {'7440-41-7': 'exactMatch'} |
| 278,781 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Beryllium' |
| 285,563 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | rdkit_post_consensus from '[Be]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 312,825 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/29059f1c-6556-… | associations resolved on the elementary layer |
| 393,138 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | typed the way the ontology types it |
| 401,949 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 401,950 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | the substance's answer, copied onto its flow |
| 403,815 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Beryllium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enric… | element name from the flow object: Beryllium |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1812399309960000/19600 | prefLabel | ef:agent/bootstrap_labels | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v0 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v1 |
| ef:activity/change/20260820T1812399309960000/19601 | name | ef:agent/bootstrap_labels | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v1 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v2 |
| ef:activity/change/20260820T1812399309960000/19602 | synonyms | ef:agent/bootstrap_labels | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v2 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v3 |
| ef:activity/change/20260820T1812399309960000/63628 | context | ef:agent/default_context_mapping | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v3 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v4 |
| ef:activity/change/20260820T1812399309960000/63629 | context_iri | ef:agent/default_context_mapping | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v4 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v5 |
| ef:activity/change/20260820T1812399309960000/219713 | unit_iri | ef:agent/unit_normalization | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v5 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v6 |
| ef:activity/change/20260820T1812399309960000/225540 | prefLabel | ef:agent/normalize_name_case | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v6 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v7 |
| ef:activity/change/20260820T1812399309960000/227034 | ec_numbers | ef:agent/ec_cross_check | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v7 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v8 |
| ef:activity/change/20260820T1812399309960000/245381 | properties | ef:agent/enrich_references | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v8 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v9 |
| ef:activity/change/20260820T1812399309960000/245382 | skos_definition | ef:agent/enrich_references | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v9 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v10 |
| ef:activity/change/20260820T1812399309960000/245383 | references | ef:agent/enrich_references | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v10 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v11 |
| ef:activity/change/20260820T1812399309960000/253565 | properties | ef:agent/rdkit_pre_consensus | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v11 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v12 |
| ef:activity/change/20260820T1812399309960000/256922 | altLabel | ef:agent/chebi_altlabels | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v12 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v13 |
| ef:activity/change/20260820T1812399309960000/264222 | altLabel | ef:agent/consensus_match | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v13 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v14 |
| ef:activity/change/20260820T1812399309960000/264223 | cas_match_labels | ef:agent/consensus_match | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v14 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v15 |
| ef:activity/change/20260820T1812399309960000/278781 | properties | ef:agent/opsin_iupac | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v15 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v16 |
| ef:activity/change/20260820T1812399309960000/285563 | properties | ef:agent/rdkit_post_consensus | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v16 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v17 |
| ef:activity/change/20260820T1812399309960000/312825 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v17 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v18 |
| ef:activity/change/20260820T1812399309960000/393138 | properties | ef:agent/normalise_property_values | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v18 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v19 |
| ef:activity/change/20260820T1812399309960000/401949 | types | ef:agent/link_flows_to_their_substance | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v19 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v20 |
| ef:activity/change/20260820T1812399309960000/401950 | properties | ef:agent/link_flows_to_their_substance | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v20 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v21 |
| ef:activity/change/20260820T1812399309960000/403815 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v21 | ef:flow/29059f1c-6556-11dd-ad8b-0800200c9a66/v22 |