Calcium
Everything that changed this flow. Back to the flow
2905c62c-6556-11dd-ad8b-0800200c9a66
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'ASP 1250' (grade code), 'LD 400C' (grade code) |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Calcium |
| cas_match_labels | 1 | consensus_match | group_key=calcium||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-70-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-a2c8e94aa1dd9747: {'7440-70-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7440-70-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_22984', 'http://purl.obolibrary.org/obo/CHEBI_29320']; candidate_pubchem_cids=[5460341, 5463478, 13828960]; selected_pubchem_cids=[5460341]; formula_similarity_expected=['Ca']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
22| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 7,115 | bootstrap_labels | prefLabel | — | [{"@value":"calcium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 7,116 | bootstrap_labels | name | calcium | — | Purged legacy name field to enforce prefLabel usage |
| 7,117 | bootstrap_labels | synonyms | ["20Ca","AC1NUT41","Blood Coagulation Factor IV","Ca(0)","Calcium compounds","Calcium dihydride","Calcium hydride (CaH2… | [] | Removed legacy synonyms field in favor of structured labels |
| 63,744 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 63,745 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-agri | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to agricultural soil |
| 215,720 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,735 | normalize_name_case | prefLabel | [{"@value":"calcium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Calcium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 234,010 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 234,011 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 234,012 | enrich_references | references | [] | [{"@id":"beilstein:4241647","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['7440-70-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_22984', 'http://purl.obolibrary.org/obo/CHEBI_29320']; candidate_pubchem_cids=[5460341, 5463478, 13828960]; selected_pubchem_cids=[5460341]; formula_similarity_expected=['Ca']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 250,292 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | rdkit_pre_consensus from '[Ca]'; added: monoisotopic_mass |
| 255,288 | chebi_altlabels | altLabel | [] | [{"@value":"20Ca","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 7 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 264,763 | consensus_match | altLabel | [{"@value":"20Ca","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"20Ca","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=calcium||dimension=Environmental > media=Water > water_body=Unknown; cas=7440-70-2; added Common Chemistry CAS names as altLabel: ASP 1250, Alcaplant, Aquacal, Atomic calcium, Blood-coagulation factor IV, CT-CCP 50, Calcium KM, Calcium atom, Calcium element, LD 400C, MeSH ID: D002118, Omyacarb T 1, Praval, T 1-101A, Vistacal, Vivinal MCA 26; object_uuid=fo-a2c8e94aa1dd9747 |
| 264,764 | consensus_match | cas_match_labels | — | {"7440-70-2":"exactMatch"} | group_key=calcium||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-70-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-a2c8e94aa1dd9747: {'7440-70-2': 'exactMatch'} |
| 275,454 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Calcium' |
| 281,968 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | rdkit_post_consensus from '[Ca]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,733 | strip_catalogue_altlabels | altLabel | [{"@value":"20Ca","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"20Ca","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Removed 2 catalogue altLabel value(s): 'ASP 1250' (grade code), 'LD 400C' (grade code) |
| 312,912 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/2905c62c-6556-… | associations resolved on the elementary layer |
| 389,764 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | typed the way the ontology types it |
| 397,046 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 397,047 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Ca"],"atte… | the substance's answer, copied onto its flow |
| 403,792 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Calcium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Calcium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichm… | element name from the flow object: Calcium |
PROV-O trail
22 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1555490862250000/7115 | prefLabel | ef:agent/bootstrap_labels | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v0 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v1 |
| ef:activity/change/20260820T1555490862250000/7116 | name | ef:agent/bootstrap_labels | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v1 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v2 |
| ef:activity/change/20260820T1555490862250000/7117 | synonyms | ef:agent/bootstrap_labels | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v2 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v3 |
| ef:activity/change/20260820T1555490862250000/63744 | context | ef:agent/default_context_mapping | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v3 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v4 |
| ef:activity/change/20260820T1555490862250000/63745 | context_iri | ef:agent/default_context_mapping | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v4 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v5 |
| ef:activity/change/20260820T1555490862250000/215720 | unit_iri | ef:agent/unit_normalization | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v5 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v6 |
| ef:activity/change/20260820T1555490862250000/222735 | prefLabel | ef:agent/normalize_name_case | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v6 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v7 |
| ef:activity/change/20260820T1555490862250000/234010 | properties | ef:agent/enrich_references | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v7 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v8 |
| ef:activity/change/20260820T1555490862250000/234011 | skos_definition | ef:agent/enrich_references | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v8 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v9 |
| ef:activity/change/20260820T1555490862250000/234012 | references | ef:agent/enrich_references | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v9 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v10 |
| ef:activity/change/20260820T1555490862250000/250292 | properties | ef:agent/rdkit_pre_consensus | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v10 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v11 |
| ef:activity/change/20260820T1555490862250000/255288 | altLabel | ef:agent/chebi_altlabels | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v11 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v12 |
| ef:activity/change/20260820T1555490862250000/264763 | altLabel | ef:agent/consensus_match | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v12 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v13 |
| ef:activity/change/20260820T1555490862250000/264764 | cas_match_labels | ef:agent/consensus_match | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v13 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v14 |
| ef:activity/change/20260820T1555490862250000/275454 | properties | ef:agent/opsin_iupac | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v14 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v15 |
| ef:activity/change/20260820T1555490862250000/281968 | properties | ef:agent/rdkit_post_consensus | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v15 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v16 |
| ef:activity/change/20260820T1555490862250000/288733 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v16 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v17 |
| ef:activity/change/20260820T1555490862250000/312912 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v17 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v18 |
| ef:activity/change/20260820T1555490862250000/389764 | properties | ef:agent/normalise_property_values | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v18 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v19 |
| ef:activity/change/20260820T1555490862250000/397046 | types | ef:agent/link_flows_to_their_substance | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v19 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v20 |
| ef:activity/change/20260820T1555490862250000/397047 | properties | ef:agent/link_flows_to_their_substance | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v20 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v21 |
| ef:activity/change/20260820T1555490862250000/403792 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v21 | ef:flow/2905c62c-6556-11dd-ad8b-0800200c9a66/v22 |