Consensus flow list

By field

14 fields
Field Changes Written by Latest note
properties 5 enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus typed the way the ontology types it
altLabel 3 chebi_altlabels, consensus_match, strip_catalogue_altlabels Removed 5 catalogue altLabel value(s): 'Bayer 5546' (trade name), 'CKB 1220' (grade code), 'Chevron 9006' (trade name), 'Ortho 9006' (trade name), 'RE 9006' (grade code)
prefLabel 2 bootstrap_labels, normalize_name_case Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
cas_match_labels 1 consensus_match group_key=methamidophos||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'10265-92-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5009ca73cb5e6426: {'10265-92-6': 'exactMatch'}
concept_associations 1 carry_associations_onto_flows associations resolved on the elementary layer
context 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
context_iri 1 default_context_mapping Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
name 1 bootstrap_labels Purged legacy name field to enforce prefLabel usage
references 1 enrich_references Added references with provenance; cas_numbers=['10265-92-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38721']; candidate_pubchem_cids=[4096]; selected_pubchem_cids=[4096]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
roles 1 link_flows_to_their_substance the substance's answer, copied onto its flow
skos_definition 1 enrich_references Merged ChEBI/PubChem definitions into skos:definition
synonyms 1 bootstrap_labels Removed legacy synonyms field in favor of structured labels
types 1 link_flows_to_their_substance the substance's answer, copied onto its flow
unit_iri 1 unit_normalization Unit IRI set from normalization of 'kg'

Where several steps wrote one field, the last one won — and the log below shows the sequence.

Changes

21
# Step Field From To Why
9,046 bootstrap_labels prefLabel [{"@value":"methamidophos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Bootstrapped prefLabel from legacy name field
9,047 bootstrap_labels name methamidophos Purged legacy name field to enforce prefLabel usage
9,048 bootstrap_labels synonyms ["AC1L1HEJ","Acephate-met","Amidor","Bayer 5546","CKB 1220","Chevron 9006","Chevron ortho 9006","ENT 27,396","Filitox",… [] Removed legacy synonyms field in favor of structured labels
64,158 default_context_mapping context {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
64,159 default_context_mapping context_iri https://vocab.brightway.one/flow-contexts/envi-air-aicrhe Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere
216,354 unit_normalization unit_iri https://vocab.brightway.one/units/unit/KiloGM Unit IRI set from normalization of 'kg'
223,236 normalize_name_case prefLabel [{"@value":"methamidophos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… [{"@value":"Methamidophos","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"… Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character)
235,844 enrich_references properties {} {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1)
235,845 enrich_references skos_definition [{"@value":"An organic thiophosphate resulting from the N-deacylation of the proinsecticide acephate.","@language":"en"… Merged ChEBI/PubChem definitions into skos:definition
235,846 enrich_references references [] [{"@id":"beilstein:1098870","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… Added references with provenance; cas_numbers=['10265-92-6']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_38721']; candidate_pubchem_cids=[4096]; selected_pubchem_cids=[4096]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes
250,812 rdkit_pre_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… rdkit_pre_consensus from 'COP(=O)(N)SC'; added: monoisotopic_mass
255,696 chebi_altlabels altLabel [] [{"@value":"O,S-Dimethyl phosphoramidothiolate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Added 8 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s)
268,653 consensus_match altLabel [{"@value":"O,S-Dimethyl phosphoramidothiolate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"O,S-Dimethyl phosphoramidothiolate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… group_key=methamidophos||dimension=Environmental > media=Ground > geography=Agricultural; cas=10265-92-6; added Common Chemistry CAS names as altLabel: (±)-Methamidophos, <em>O</em>,<em>S</em>-Dimethyl phosphoramidothioate, <em>O</em>,<em>S</em>-Dimethyl thiophosphoramide, Acephate-met, Amidor, Bayer 5546, CKB 1220, Chevron 9006, Filitox, Methyl phosphoramidothioate ((MeO)(MeS)P(O)(NH<sub>2</sub>)), Monitor, Monitor (insecticide), Nitofol, Ortho 9006, Ortho Monitor, RE 9006, Sniper, Sniper (organophosphate insecticide), Sundaphos, Tamaron, [Methoxy(methylsulfanyl)phosphoryl]amine; object_uuid=fo-5009ca73cb5e6426
268,654 consensus_match cas_match_labels {"10265-92-6":"exactMatch"} group_key=methamidophos||dimension=Environmental > media=Ground > geography=Agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'10265-92-6': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-5009ca73cb5e6426: {'10265-92-6': 'exactMatch'}
276,008 opsin_iupac properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Methamidophos'
282,576 rdkit_post_consensus properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… rdkit_post_consensus from 'COP(N)(=O)SC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass
289,172 strip_catalogue_altlabels altLabel [{"@value":"O,S-Dimethyl phosphoramidothiolate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… [{"@value":"O,S-Dimethyl phosphoramidothiolate","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pro… Removed 5 catalogue altLabel value(s): 'Bayer 5546' (trade name), 'CKB 1220' (grade code), 'Chevron 9006' (trade name), 'Ortho 9006' (trade name), 'RE 9006' (grade code)
313,117 carry_associations_onto_flows concept_associations [] [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/29063b87-6556-… associations resolved on the elementary layer
390,358 normalise_property_values properties {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C2H8NO2PS"… typed the way the ontology types it
397,925 link_flows_to_their_substance types ["https://w3id.org/chemrof/NeutralMolecule"] the substance's answer, copied onto its flow
397,926 link_flows_to_their_substance roles [{"@id":"http://purl.obolibrary.org/obo/CHEBI_22153","rdfs:label":"acaricide","http://www.w3.org/2004/02/skos/core#defi… the substance's answer, copied onto its flow

PROV-O trail

21 activities

One activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.

Activity Field Agent Used Generated
ef:activity/change/20260820T0738569779880000/9046 prefLabel ef:agent/bootstrap_labels ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v0 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v1
ef:activity/change/20260820T0738569779880000/9047 name ef:agent/bootstrap_labels ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v1 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v2
ef:activity/change/20260820T0738569779880000/9048 synonyms ef:agent/bootstrap_labels ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v2 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v3
ef:activity/change/20260820T0738569779880000/64158 context ef:agent/default_context_mapping ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v3 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v4
ef:activity/change/20260820T0738569779880000/64159 context_iri ef:agent/default_context_mapping ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v4 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v5
ef:activity/change/20260820T0738569779880000/216354 unit_iri ef:agent/unit_normalization ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v5 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v6
ef:activity/change/20260820T0738569779880000/223236 prefLabel ef:agent/normalize_name_case ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v6 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v7
ef:activity/change/20260820T0738569779880000/235844 properties ef:agent/enrich_references ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v7 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v8
ef:activity/change/20260820T0738569779880000/235845 skos_definition ef:agent/enrich_references ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v8 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v9
ef:activity/change/20260820T0738569779880000/235846 references ef:agent/enrich_references ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v9 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v10
ef:activity/change/20260820T0738569779880000/250812 properties ef:agent/rdkit_pre_consensus ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v10 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v11
ef:activity/change/20260820T0738569779880000/255696 altLabel ef:agent/chebi_altlabels ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v11 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v12
ef:activity/change/20260820T0738569779880000/268653 altLabel ef:agent/consensus_match ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v12 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v13
ef:activity/change/20260820T0738569779880000/268654 cas_match_labels ef:agent/consensus_match ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v13 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v14
ef:activity/change/20260820T0738569779880000/276008 properties ef:agent/opsin_iupac ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v14 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v15
ef:activity/change/20260820T0738569779880000/282576 properties ef:agent/rdkit_post_consensus ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v15 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v16
ef:activity/change/20260820T0738569779880000/289172 altLabel ef:agent/strip_catalogue_altlabels ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v16 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v17
ef:activity/change/20260820T0738569779880000/313117 concept_associations ef:agent/carry_associations_onto_flows ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v17 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v18
ef:activity/change/20260820T0738569779880000/390358 properties ef:agent/normalise_property_values ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v18 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v19
ef:activity/change/20260820T0738569779880000/397925 types ef:agent/link_flows_to_their_substance ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v19 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v20
ef:activity/change/20260820T0738569779880000/397926 roles ef:agent/link_flows_to_their_substance ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v20 ef:flow/29063b87-6556-11dd-ad8b-0800200c9a66/v21

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