Thulium
Everything that changed this flow. Back to the flow
29066294-6556-11dd-ad8b-0800200c9a66
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 7 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_authoritative, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Thulium |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=thulium||dimension=Resource > media=Ground; cas=7440-30-4; added Common Chemistry CAS names as altLabel: MeSH ID: D013932, Thulium-169; object_uuid=fo-6629110f8311254f |
| cas_match_labels | 1 | consensus_match | group_key=thulium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-30-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-6629110f8311254f: {'7440-30-4': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 231-140-2 from CAS 7440-30-4 |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7440-30-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_33380']; candidate_pubchem_cids=[23961, 177839076]; selected_pubchem_cids=[23961]; formula_similarity_expected=['Tm']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,696 | bootstrap_labels | prefLabel | — | [{"@value":"thulium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 19,697 | bootstrap_labels | name | thulium | — | Purged legacy name field to enforce prefLabel usage |
| 19,698 | bootstrap_labels | synonyms | ["(171tm)thulium","69Tm","AC1L2N44","KST-1A1951","TM","tulio"] | [] | Removed legacy synonyms field in favor of structured labels |
| 64,266 | default_context_mapping | context | — | {"dimension":"Resource","media":"Ground"} | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| 64,267 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/reso-grou | Mapped from context mapping for source=EF 3.1, source context Resources > Resources from ground > Non-renewable element resources from ground |
| 219,748 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,575 | normalize_name_case | prefLabel | [{"@value":"thulium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Thulium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,048 | ec_cross_check | ec_numbers | [] | ["231-140-2"] | Resolved from EC-inventory: 231-140-2 from CAS 7440-30-4 |
| 245,466 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tm"],"atte… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 245,467 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 245,468 | enrich_references | references | [] | [{"@id":"gmelin:16307","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['7440-30-4']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_33380']; candidate_pubchem_cids=[23961, 177839076]; selected_pubchem_cids=[23961]; formula_similarity_expected=['Tm']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,593 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tm"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tm"],"atte… | rdkit_pre_consensus from '[Tm]'; added: monoisotopic_mass |
| 256,950 | chebi_altlabels | altLabel | [] | [{"@value":"69Tm","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | Added 3 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,638 | consensus_match | altLabel | [{"@value":"69Tm","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | [{"@value":"69Tm","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-… | group_key=thulium||dimension=Resource > media=Ground; cas=7440-30-4; added Common Chemistry CAS names as altLabel: MeSH ID: D013932, Thulium-169; object_uuid=fo-6629110f8311254f |
| 272,639 | consensus_match | cas_match_labels | — | {"7440-30-4":"exactMatch"} | group_key=thulium||dimension=Resource > media=Ground; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-30-4': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-6629110f8311254f: {'7440-30-4': 'exactMatch'} |
| 278,828 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tm"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tm"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Thulium' |
| 279,783 | rdkit_authoritative | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Tm"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | rdkit_authoritative: set definitive structural data from unique InChI |
| 285,617 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | rdkit_post_consensus from '[Tm]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 313,171 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/29066294-6556-… | associations resolved on the elementary layer |
| 393,197 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | typed the way the ontology types it |
| 402,030 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 402,031 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","rdfs:label":"Molecul… | the substance's answer, copied onto its flow |
| 403,856 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Thulium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Thulium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enrichm… | element name from the flow object: Thulium |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T0738569779880000/19696 | prefLabel | ef:agent/bootstrap_labels | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v0 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v1 |
| ef:activity/change/20260820T0738569779880000/19697 | name | ef:agent/bootstrap_labels | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v1 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v2 |
| ef:activity/change/20260820T0738569779880000/19698 | synonyms | ef:agent/bootstrap_labels | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v2 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v3 |
| ef:activity/change/20260820T0738569779880000/64266 | context | ef:agent/default_context_mapping | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v3 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v4 |
| ef:activity/change/20260820T0738569779880000/64267 | context_iri | ef:agent/default_context_mapping | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v4 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v5 |
| ef:activity/change/20260820T0738569779880000/219748 | unit_iri | ef:agent/unit_normalization | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v5 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v6 |
| ef:activity/change/20260820T0738569779880000/225575 | prefLabel | ef:agent/normalize_name_case | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v6 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v7 |
| ef:activity/change/20260820T0738569779880000/227048 | ec_numbers | ef:agent/ec_cross_check | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v7 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v8 |
| ef:activity/change/20260820T0738569779880000/245466 | properties | ef:agent/enrich_references | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v8 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v9 |
| ef:activity/change/20260820T0738569779880000/245467 | skos_definition | ef:agent/enrich_references | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v9 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v10 |
| ef:activity/change/20260820T0738569779880000/245468 | references | ef:agent/enrich_references | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v10 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v11 |
| ef:activity/change/20260820T0738569779880000/253593 | properties | ef:agent/rdkit_pre_consensus | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v11 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v12 |
| ef:activity/change/20260820T0738569779880000/256950 | altLabel | ef:agent/chebi_altlabels | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v12 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v13 |
| ef:activity/change/20260820T0738569779880000/272638 | altLabel | ef:agent/consensus_match | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v13 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v14 |
| ef:activity/change/20260820T0738569779880000/272639 | cas_match_labels | ef:agent/consensus_match | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v14 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v15 |
| ef:activity/change/20260820T0738569779880000/278828 | properties | ef:agent/opsin_iupac | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v15 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v16 |
| ef:activity/change/20260820T0738569779880000/279783 | properties | ef:agent/rdkit_authoritative | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v16 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v17 |
| ef:activity/change/20260820T0738569779880000/285617 | properties | ef:agent/rdkit_post_consensus | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v17 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v18 |
| ef:activity/change/20260820T0738569779880000/313171 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v18 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v19 |
| ef:activity/change/20260820T0738569779880000/393197 | properties | ef:agent/normalise_property_values | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v19 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v20 |
| ef:activity/change/20260820T0738569779880000/402030 | types | ef:agent/link_flows_to_their_substance | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v20 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v21 |
| ef:activity/change/20260820T0738569779880000/402031 | properties | ef:agent/link_flows_to_their_substance | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v21 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v22 |
| ef:activity/change/20260820T0738569779880000/403856 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v22 | ef:flow/29066294-6556-11dd-ad8b-0800200c9a66/v23 |