Paraquat
Everything that changed this flow. Back to the flow
29f91915-f685-4315-9f01-5a86385d5a73
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| altLabel | 5 | chebi_altlabels, consensus_match, dedupe_altlabels, strip_cross_object_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| prefLabel | 2 | bootstrap_labels, consensus_match | cas=4685-14-7; cc_chebi_agreed_name='Paraquat'; object_uuid=fo-d5e5a11080bed5ec |
| cas_match_labels | 1 | consensus_match | group_key=1,1'-dimethyl-4,4'-bipyridinium||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'4685-14-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d5e5a11080bed5ec: {'4685-14-7': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['4685-14-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_34905']; candidate_pubchem_cids=[15939, 12391261]; selected_pubchem_cids=[15939]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
23| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 1,066 | bootstrap_labels | prefLabel | — | [{"@value":"1,1'-dimethyl-4,4'-bipyridinium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:… | Bootstrapped prefLabel from legacy name field |
| 1,067 | bootstrap_labels | name | 1,1'-dimethyl-4,4'-bipyridinium | — | Purged legacy name field to enforce prefLabel usage |
| 1,068 | bootstrap_labels | synonyms | ["1,1'-Dimethyl-4,4'-bipyridinium cation","1,1'-Dimethyl-4,4'-bipyridinium salt","1,1'-Dimethyl-4,4'-bipyridyldiylium",… | [] | Removed legacy synonyms field in favor of structured labels |
| 64,928 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Unknown"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 64,929 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-unkn | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to air, unspecified |
| 213,696 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 228,203 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 228,204 | enrich_references | skos_definition | — | [{"@value":"An organic cation that consists of 4,4'-bipyridine bearing two N-methyl substituents loctated at the 1- and… | Merged ChEBI/PubChem definitions into skos:definition |
| 228,205 | enrich_references | references | [] | [{"@id":"foodb.food:FDB011120","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedT… | Added references with provenance; cas_numbers=['4685-14-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_34905']; candidate_pubchem_cids=[15939, 12391261]; selected_pubchem_cids=[15939]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,613 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | rdkit_pre_consensus from 'C[N+]1=CC=C(C=C1)C2=CC=[N+](C=C2)C'; added: monoisotopic_mass |
| 254,518 | chebi_altlabels | altLabel | [] | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | Added 9 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 257,418 | strip_cross_object_altlabels | altLabel | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | Removed 1 altLabel value(s) that duplicate another flow object's prefLabel: 'Paraquat' |
| 258,042 | consensus_match | prefLabel | [{"@value":"1,1'-dimethyl-4,4'-bipyridinium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:… | [{"@value":"Paraquat","@language":"en","source":{"prov:wasGeneratedBy":"consensus_match","prov:wasAttributedTo":"consen… | cas=4685-14-7; cc_chebi_agreed_name='Paraquat'; object_uuid=fo-d5e5a11080bed5ec |
| 258,043 | consensus_match | altLabel | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | cas=4685-14-7; added original name as altLabel after CC/ChEBI rename; object_uuid=fo-d5e5a11080bed5ec |
| 258,044 | consensus_match | altLabel | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | group_key=1,1'-dimethyl-4,4'-bipyridinium||dimension=Environmental > media=Ground > geography=Unknown; cas=4685-14-7; added Common Chemistry CAS names as altLabel: 1,1′-Dimethyl-4,4′-bipyridinium, 1,1′-Dimethyl-4,4′-bipyridinium cation, 1-Methyl-4-(1-methylpyridin-1-ium-4-yl)pyridin-1-ium, 4,4′-Bipyridinium, 1,1′-dimethyl-, <em>N</em>,<em>N</em>′-Dimethyl-4,4′-bipyridinium, <em>N</em>,<em>N</em>′-Dimethyl-4,4′-bipyridinium dication, MeSH ID: D010269, Methyl viologen dication, Methyl viologen(2+), Spraytop-graze, Starfire; object_uuid=fo-d5e5a11080bed5ec |
| 258,045 | consensus_match | cas_match_labels | — | {"4685-14-7":"exactMatch"} | group_key=1,1'-dimethyl-4,4'-bipyridinium||dimension=Environmental > media=Ground > geography=Unknown; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'4685-14-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-d5e5a11080bed5ec: {'4685-14-7': 'exactMatch'} |
| 273,756 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from '1,1'-dimethyl-[4,4'-bipyridin]-1,1'-diium' |
| 280,131 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | rdkit_post_consensus from 'C[n+]1ccc(-c2cc[n+](C)cc2)cc1'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,029 | dedupe_altlabels | altLabel | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | [{"@value":"1,1'-dimethyl-4,4'-bipyridyldiylium","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","pr… | Deduplicated altLabel values and removed entries matching prefLabel |
| 313,504 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/29f91915-f685-… | associations resolved on the elementary layer |
| 388,035 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C12H14N2",… | typed the way the ontology types it |
| 394,611 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/MolecularCation"] | the substance's answer, copied onto its flow |
| 394,612 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_24527","rdfs:label":"herbicide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
PROV-O trail
23 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1555490862250000/1066 | prefLabel | ef:agent/bootstrap_labels | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v0 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v1 |
| ef:activity/change/20260820T1555490862250000/1067 | name | ef:agent/bootstrap_labels | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v1 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v2 |
| ef:activity/change/20260820T1555490862250000/1068 | synonyms | ef:agent/bootstrap_labels | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v2 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v3 |
| ef:activity/change/20260820T1555490862250000/64928 | context | ef:agent/default_context_mapping | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v3 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v4 |
| ef:activity/change/20260820T1555490862250000/64929 | context_iri | ef:agent/default_context_mapping | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v4 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v5 |
| ef:activity/change/20260820T1555490862250000/213696 | unit_iri | ef:agent/unit_normalization | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v5 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v6 |
| ef:activity/change/20260820T1555490862250000/228203 | properties | ef:agent/enrich_references | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v6 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v7 |
| ef:activity/change/20260820T1555490862250000/228204 | skos_definition | ef:agent/enrich_references | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v7 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v8 |
| ef:activity/change/20260820T1555490862250000/228205 | references | ef:agent/enrich_references | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v8 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v9 |
| ef:activity/change/20260820T1555490862250000/248613 | properties | ef:agent/rdkit_pre_consensus | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v9 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v10 |
| ef:activity/change/20260820T1555490862250000/254518 | altLabel | ef:agent/chebi_altlabels | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v10 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v11 |
| ef:activity/change/20260820T1555490862250000/257418 | altLabel | ef:agent/strip_cross_object_altlabels | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v11 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v12 |
| ef:activity/change/20260820T1555490862250000/258042 | prefLabel | ef:agent/consensus_match | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v12 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v13 |
| ef:activity/change/20260820T1555490862250000/258043 | altLabel | ef:agent/consensus_match | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v13 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v14 |
| ef:activity/change/20260820T1555490862250000/258044 | altLabel | ef:agent/consensus_match | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v14 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v15 |
| ef:activity/change/20260820T1555490862250000/258045 | cas_match_labels | ef:agent/consensus_match | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v15 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v16 |
| ef:activity/change/20260820T1555490862250000/273756 | properties | ef:agent/opsin_iupac | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v16 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v17 |
| ef:activity/change/20260820T1555490862250000/280131 | properties | ef:agent/rdkit_post_consensus | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v17 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v18 |
| ef:activity/change/20260820T1555490862250000/292029 | altLabel | ef:agent/dedupe_altlabels | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v18 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v19 |
| ef:activity/change/20260820T1555490862250000/313504 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v19 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v20 |
| ef:activity/change/20260820T1555490862250000/388035 | properties | ef:agent/normalise_property_values | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v20 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v21 |
| ef:activity/change/20260820T1555490862250000/394611 | types | ef:agent/link_flows_to_their_substance | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v21 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v22 |
| ef:activity/change/20260820T1555490862250000/394612 | roles | ef:agent/link_flows_to_their_substance | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v22 | ef:flow/29f91915-f685-4315-9f01-5a86385d5a73/v23 |