Phosphonic Acid
Everything that changed this flow. Back to the flow
2a045390-d12a-4e8a-9509-0a76c83b6547
By field
14 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus, withhold_ambiguous_mass | typed the way the ontology types it |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=phosphonicacid||dimension=Environmental > media=Air > strata=Long-term; cas=13598-36-2; added Common Chemistry CAS names as altLabel: Dihydroxyphosphine oxide; object_uuid=fo-ab5e63efb95c9b2d |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=phosphonicacid||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'13598-36-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ab5e63efb95c9b2d: {'13598-36-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['13598-36-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_44976']; candidate_pubchem_cids=[407, 107909, 3084169, 6101762]; selected_pubchem_cids=[3084169]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| roles | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 17,989 | bootstrap_labels | prefLabel | — | [{"@value":"phosphonic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… | Bootstrapped prefLabel from legacy name field |
| 17,990 | bootstrap_labels | name | phosphonic acid | — | Purged legacy name field to enforce prefLabel usage |
| 17,991 | bootstrap_labels | synonyms | ["inorganic","phosphonicacid","fosforigzuur","orthophosphorousacid","phosphorigesã¤ure","phosphorigesã¤uremin.98,5%","p… | [] | Removed legacy synonyms field in favor of structured labels |
| 64,952 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 64,953 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 219,235 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,208 | normalize_name_case | prefLabel | [{"@value":"phosphonic acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… | [{"@value":"Phosphonic Acid","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo"… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 244,036 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 244,037 | enrich_references | skos_definition | — | [{"@value":"A phosphorus oxoacid that consists of a single pentavalent phosphorus covalently bound via single bonds to… | Merged ChEBI/PubChem definitions into skos:definition |
| 244,038 | enrich_references | references | [] | [{"@id":"gmelin:1619","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"conse… | Added references with provenance; cas_numbers=['13598-36-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_44976']; candidate_pubchem_cids=[407, 107909, 3084169, 6101762]; selected_pubchem_cids=[3084169]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,180 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | rdkit_pre_consensus from 'O[P+](=O)O'; added: molecular_mass, monoisotopic_mass |
| 256,759 | chebi_altlabels | altLabel | [] | [{"@value":"(HO)2HPO","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | Added 11 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 270,701 | consensus_match | altLabel | [{"@value":"(HO)2HPO","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | [{"@value":"(HO)2HPO","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consen… | group_key=phosphonicacid||dimension=Environmental > media=Air > strata=Long-term; cas=13598-36-2; added Common Chemistry CAS names as altLabel: Dihydroxyphosphine oxide; object_uuid=fo-ab5e63efb95c9b2d |
| 270,702 | consensus_match | cas_match_labels | — | {"13598-36-2":"exactMatch"} | group_key=phosphonicacid||dimension=Environmental > media=Air > strata=Long-term; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'13598-36-2': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-ab5e63efb95c9b2d: {'13598-36-2': 'exactMatch'} |
| 285,158 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | rdkit_post_consensus from 'O[P+](=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 287,139 | withhold_ambiguous_mass | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | withhold_ambiguous_mass: removed molecular_mass, monoisotopic_mass; the flow carries 2 candidate structures, so no one mass describes it |
| 313,514 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/2a045390-d12a-… | associations resolved on the elementary layer |
| 392,767 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["H2O3P+","H… | typed the way the ontology types it |
| 401,380 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 401,381 | link_flows_to_their_substance | roles | — | [{"@id":"http://purl.obolibrary.org/obo/CHEBI_24127","rdfs:label":"fungicide","http://www.w3.org/2004/02/skos/core#defi… | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260820T1416470405690000/17989 | prefLabel | ef:agent/bootstrap_labels | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v0 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v1 |
| ef:activity/change/20260820T1416470405690000/17990 | name | ef:agent/bootstrap_labels | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v1 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v2 |
| ef:activity/change/20260820T1416470405690000/17991 | synonyms | ef:agent/bootstrap_labels | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v2 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v3 |
| ef:activity/change/20260820T1416470405690000/64952 | context | ef:agent/default_context_mapping | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v3 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v4 |
| ef:activity/change/20260820T1416470405690000/64953 | context_iri | ef:agent/default_context_mapping | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v4 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v5 |
| ef:activity/change/20260820T1416470405690000/219235 | unit_iri | ef:agent/unit_normalization | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v5 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v6 |
| ef:activity/change/20260820T1416470405690000/225208 | prefLabel | ef:agent/normalize_name_case | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v6 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v7 |
| ef:activity/change/20260820T1416470405690000/244036 | properties | ef:agent/enrich_references | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v7 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v8 |
| ef:activity/change/20260820T1416470405690000/244037 | skos_definition | ef:agent/enrich_references | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v8 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v9 |
| ef:activity/change/20260820T1416470405690000/244038 | references | ef:agent/enrich_references | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v9 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v10 |
| ef:activity/change/20260820T1416470405690000/253180 | properties | ef:agent/rdkit_pre_consensus | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v10 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v11 |
| ef:activity/change/20260820T1416470405690000/256759 | altLabel | ef:agent/chebi_altlabels | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v11 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v12 |
| ef:activity/change/20260820T1416470405690000/270701 | altLabel | ef:agent/consensus_match | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v12 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v13 |
| ef:activity/change/20260820T1416470405690000/270702 | cas_match_labels | ef:agent/consensus_match | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v13 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v14 |
| ef:activity/change/20260820T1416470405690000/285158 | properties | ef:agent/rdkit_post_consensus | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v14 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v15 |
| ef:activity/change/20260820T1416470405690000/287139 | properties | ef:agent/withhold_ambiguous_mass | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v15 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v16 |
| ef:activity/change/20260820T1416470405690000/313514 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v16 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v17 |
| ef:activity/change/20260820T1416470405690000/392767 | properties | ef:agent/normalise_property_values | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v17 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v18 |
| ef:activity/change/20260820T1416470405690000/401380 | types | ef:agent/link_flows_to_their_substance | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v18 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v19 |
| ef:activity/change/20260820T1416470405690000/401381 | roles | ef:agent/link_flows_to_their_substance | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v19 | ef:flow/2a045390-d12a-4e8a-9509-0a76c83b6547/v20 |