Bomyl
Everything that changed this flow. Back to the flow
2badb716-40f7-400f-8534-96d98f462d19
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 4 | enrich_references, normalise_property_values, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 2 | consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'GC 3707' (grade code), 'General Chemicals 3707' (trade name) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=bomyl||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['pubchem']; cas_sources={'122-10-1': ['pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9298d6d1ac617e5a: {'122-10-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['122-10-1']; matched_chebi_ids=[]; candidate_pubchem_cids=[31199, 6433156]; selected_pubchem_cids=[31199]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
18| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 12,048 | bootstrap_labels | prefLabel | — | [{"@value":"bomyl","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | Bootstrapped prefLabel from legacy name field |
| 12,049 | bootstrap_labels | name | bomyl | — | Purged legacy name field to enforce prefLabel usage |
| 12,050 | bootstrap_labels | synonyms | ["1,3-Bis-(carboxymethoxy)-1-propen-2-yl-dimethylfosfat","1,3-Di(methoxycarbonyl)prop-1-en-2-yl dimethyl phosphate","2-… | [] | Removed legacy synonyms field in favor of structured labels |
| 65,930 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Surface water"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 65,931 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-suwa | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to fresh water |
| 217,329 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 223,885 | normalize_name_case | prefLabel | [{"@value":"bomyl","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | [{"@value":"Bomyl","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consensu… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 238,629 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H15O8P"]… | Added ChEBI/PubChem properties (chebi_ids=0, pubchem_cids=1) |
| 238,630 | enrich_references | skos_definition | — | [] | Merged ChEBI/PubChem definitions into skos:definition |
| 238,631 | enrich_references | references | [] | [{"@id":"https://commonchemistry.cas.org/detail?cas_rn=122-10-1","provenance":{"prov:wasGeneratedBy":"enrich_references… | Added references with provenance; cas_numbers=['122-10-1']; matched_chebi_ids=[]; candidate_pubchem_cids=[31199, 6433156]; selected_pubchem_cids=[31199]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 251,606 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H15O8P"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H15O8P"]… | rdkit_pre_consensus from 'COC(=O)CC(=CC(=O)OC)OP(=O)(OC)OC'; added: molecular_mass, monoisotopic_mass |
| 264,430 | consensus_match | altLabel | [] | [{"@value":"2-Pentenedioic acid, 3-[(dimethoxyphosphinyl)oxy]-, 1,5-dimethyl ester","@language":"en","source":{"prov:wa… | group_key=bomyl||dimension=Environmental > media=Water > water_body=Long-term; cas=122-10-1; added Common Chemistry CAS names as altLabel: 2-Pentenedioic acid, 3-[(dimethoxyphosphinyl)oxy]-, 1,5-dimethyl ester, 2-Pentenedioic acid, 3-[(dimethoxyphosphinyl)oxy]-, dimethyl ester, Dimethyl 3-hydroxyglutaconate dimethyl phosphate, Dimethyl-1,3-di(carbomethoxy)-1-propen-2-yl phosphate, ENT 24,833, GC 3707, General Chemicals 3707, Glutaconic acid, 3-hydroxy-, dimethyl ester, dimethyl phosphate, Phosphoric acid, dimethyl ester, ester with dimethyl 3-hydroxyglutaconate; object_uuid=fo-9298d6d1ac617e5a |
| 264,431 | consensus_match | cas_match_labels | — | {"122-10-1":"exactMatch"} | group_key=bomyl||dimension=Environmental > media=Water > water_body=Long-term; group_sources=['pubchem']; cas_sources={'122-10-1': ['pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-9298d6d1ac617e5a: {'122-10-1': 'exactMatch'} |
| 283,425 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H15O8P"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H15O8P"]… | rdkit_post_consensus from 'COC(=O)CC(=CC(=O)OC)OP(=O)(OC)OC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 289,731 | strip_catalogue_altlabels | altLabel | [{"@value":"2-Pentenedioic acid, 3-[(dimethoxyphosphinyl)oxy]-, 1,5-dimethyl ester","@language":"en","source":{"prov:wa… | [{"@value":"2-Pentenedioic acid, 3-[(dimethoxyphosphinyl)oxy]-, 1,5-dimethyl ester","@language":"en","source":{"prov:wa… | Removed 2 catalogue altLabel value(s): 'GC 3707' (grade code), 'General Chemicals 3707' (trade name) |
| 313,982 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/2badb716-40f7-… | associations resolved on the elementary layer |
| 391,143 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H15O8P"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C9H15O8P"]… | typed the way the ontology types it |
| 399,052 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
18 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260821T1554374006150000/12048 | prefLabel | ef:agent/bootstrap_labels | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v0 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v1 |
| ef:activity/change/20260821T1554374006150000/12049 | name | ef:agent/bootstrap_labels | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v1 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v2 |
| ef:activity/change/20260821T1554374006150000/12050 | synonyms | ef:agent/bootstrap_labels | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v2 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v3 |
| ef:activity/change/20260821T1554374006150000/65930 | context | ef:agent/default_context_mapping | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v3 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v4 |
| ef:activity/change/20260821T1554374006150000/65931 | context_iri | ef:agent/default_context_mapping | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v4 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v5 |
| ef:activity/change/20260821T1554374006150000/217329 | unit_iri | ef:agent/unit_normalization | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v5 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v6 |
| ef:activity/change/20260821T1554374006150000/223885 | prefLabel | ef:agent/normalize_name_case | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v6 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v7 |
| ef:activity/change/20260821T1554374006150000/238629 | properties | ef:agent/enrich_references | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v7 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v8 |
| ef:activity/change/20260821T1554374006150000/238630 | skos_definition | ef:agent/enrich_references | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v8 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v9 |
| ef:activity/change/20260821T1554374006150000/238631 | references | ef:agent/enrich_references | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v9 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v10 |
| ef:activity/change/20260821T1554374006150000/251606 | properties | ef:agent/rdkit_pre_consensus | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v10 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v11 |
| ef:activity/change/20260821T1554374006150000/264430 | altLabel | ef:agent/consensus_match | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v11 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v12 |
| ef:activity/change/20260821T1554374006150000/264431 | cas_match_labels | ef:agent/consensus_match | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v12 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v13 |
| ef:activity/change/20260821T1554374006150000/283425 | properties | ef:agent/rdkit_post_consensus | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v13 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v14 |
| ef:activity/change/20260821T1554374006150000/289731 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v14 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v15 |
| ef:activity/change/20260821T1554374006150000/313982 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v15 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v16 |
| ef:activity/change/20260821T1554374006150000/391143 | properties | ef:agent/normalise_property_values | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v16 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v17 |
| ef:activity/change/20260821T1554374006150000/399052 | types | ef:agent/link_flows_to_their_substance | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v17 | ef:flow/2badb716-40f7-400f-8534-96d98f462d19/v18 |