Icosane
Everything that changed this flow. Back to the flow
2d5b4977-0ffe-48cd-8428-990c5ee76836
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 5 | enrich_references, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | typed the way the ontology types it |
| altLabel | 3 | chebi_altlabels, consensus_match, strip_catalogue_altlabels | Removed 2 catalogue altLabel value(s): 'MPCM 37' (grade code), 'NSC 62789' (registry code) |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=icosane||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'112-95-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f1a2ecda66bc6f8f: {'112-95-8': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['112-95-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_43619']; candidate_pubchem_cids=[8222, 78789]; selected_pubchem_cids=[8222]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
20| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 4,592 | bootstrap_labels | prefLabel | — | [{"@value":"icosane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Bootstrapped prefLabel from legacy name field |
| 4,593 | bootstrap_labels | name | icosane | — | Purged legacy name field to enforce prefLabel usage |
| 4,594 | bootstrap_labels | synonyms | ["organic","icosane","parafol20"] | [] | Removed legacy synonyms field in favor of structured labels |
| 66,956 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Aircraft cruise height"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 66,957 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-aicrhe | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to lower stratosphere and upper troposphere |
| 214,873 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 222,146 | normalize_name_case | prefLabel | [{"@value":"icosane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | [{"@value":"Icosane","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"consen… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 231,593 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 231,594 | enrich_references | skos_definition | — | [{"@value":"A straight chain alkane composed of 20 carbon atoms. It has been isolated from the leaves of Agave attenuat… | Merged ChEBI/PubChem definitions into skos:definition |
| 231,595 | enrich_references | references | [] | [{"@id":"beilstein:1700722","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":… | Added references with provenance; cas_numbers=['112-95-8']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_43619']; candidate_pubchem_cids=[8222, 78789]; selected_pubchem_cids=[8222]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 249,584 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | rdkit_pre_consensus from 'CCCCCCCCCCCCCCCCCCCC'; added: monoisotopic_mass |
| 254,954 | chebi_altlabels | altLabel | [] | [{"@value":"CH3-[CH2]18-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Added 5 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 267,914 | consensus_match | altLabel | [{"@value":"CH3-[CH2]18-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"CH3-[CH2]18-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | group_key=icosane||dimension=Environmental > media=Water > water_body=Surface water; cas=112-95-8; added Common Chemistry CAS names as altLabel: MPCM 37, NSC 62789, Parafol 20Z; object_uuid=fo-f1a2ecda66bc6f8f |
| 267,915 | consensus_match | cas_match_labels | — | {"112-95-8":"exactMatch"} | group_key=icosane||dimension=Environmental > media=Water > water_body=Surface water; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'112-95-8': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-f1a2ecda66bc6f8f: {'112-95-8': 'exactMatch'} |
| 274,717 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Icosane' |
| 281,180 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | rdkit_post_consensus from 'CCCCCCCCCCCCCCCCCCCC'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 288,192 | strip_catalogue_altlabels | altLabel | [{"@value":"CH3-[CH2]18-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | [{"@value":"CH3-[CH2]18-CH3","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":… | Removed 2 catalogue altLabel value(s): 'MPCM 37' (grade code), 'NSC 62789' (registry code) |
| 314,495 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/2d5b4977-0ffe-… | associations resolved on the elementary layer |
| 389,024 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C20H42"],"… | typed the way the ontology types it |
| 396,003 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
PROV-O trail
20 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260822T0600486828500000/4592 | prefLabel | ef:agent/bootstrap_labels | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v0 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v1 |
| ef:activity/change/20260822T0600486828500000/4593 | name | ef:agent/bootstrap_labels | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v1 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v2 |
| ef:activity/change/20260822T0600486828500000/4594 | synonyms | ef:agent/bootstrap_labels | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v2 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v3 |
| ef:activity/change/20260822T0600486828500000/66956 | context | ef:agent/default_context_mapping | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v3 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v4 |
| ef:activity/change/20260822T0600486828500000/66957 | context_iri | ef:agent/default_context_mapping | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v4 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v5 |
| ef:activity/change/20260822T0600486828500000/214873 | unit_iri | ef:agent/unit_normalization | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v5 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v6 |
| ef:activity/change/20260822T0600486828500000/222146 | prefLabel | ef:agent/normalize_name_case | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v6 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v7 |
| ef:activity/change/20260822T0600486828500000/231593 | properties | ef:agent/enrich_references | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v7 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v8 |
| ef:activity/change/20260822T0600486828500000/231594 | skos_definition | ef:agent/enrich_references | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v8 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v9 |
| ef:activity/change/20260822T0600486828500000/231595 | references | ef:agent/enrich_references | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v9 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v10 |
| ef:activity/change/20260822T0600486828500000/249584 | properties | ef:agent/rdkit_pre_consensus | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v10 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v11 |
| ef:activity/change/20260822T0600486828500000/254954 | altLabel | ef:agent/chebi_altlabels | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v11 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v12 |
| ef:activity/change/20260822T0600486828500000/267914 | altLabel | ef:agent/consensus_match | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v12 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v13 |
| ef:activity/change/20260822T0600486828500000/267915 | cas_match_labels | ef:agent/consensus_match | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v13 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v14 |
| ef:activity/change/20260822T0600486828500000/274717 | properties | ef:agent/opsin_iupac | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v14 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v15 |
| ef:activity/change/20260822T0600486828500000/281180 | properties | ef:agent/rdkit_post_consensus | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v15 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v16 |
| ef:activity/change/20260822T0600486828500000/288192 | altLabel | ef:agent/strip_catalogue_altlabels | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v16 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v17 |
| ef:activity/change/20260822T0600486828500000/314495 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v17 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v18 |
| ef:activity/change/20260822T0600486828500000/389024 | properties | ef:agent/normalise_property_values | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v18 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v19 |
| ef:activity/change/20260822T0600486828500000/396003 | types | ef:agent/link_flows_to_their_substance | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v19 | ef:flow/2d5b4977-0ffe-48cd-8428-990c5ee76836/v20 |